Towards a Complete Pipeline for Segmenting Nuclei in Feulgen-Stained Images

• URL: http://arxiv.org/abs/2002.08331v1
• Date: Wed, 19 Feb 2020 18:14:57 GMT
• Title: Towards a Complete Pipeline for Segmenting Nuclei in Feulgen-Stained Images
• Authors: Luiz Antonio Buschetto Macarini, Aldo von Wangenheim, Felipe Perozzo Dalto\'e, Alexandre Sherlley Casimiro Onofre, Fabiana Botelho de Miranda Onofre, Marcelo Ricardo Stemmer
• Abstract summary: Cervical cancer is the second most common cancer type in women around the world. We present a complete pipeline for the segmentation of nuclei in Feulgen-stained images using Convolutional Neural Networks. We achieved an overall IoU of 0.78, showing the affordability of the approach of nuclei segmentation on Feulgen-stained images.
• Score: 52.946144307741974
• License: http://creativecommons.org/licenses/by-nc-sa/4.0/
• Abstract: Cervical cancer is the second most common cancer type in women around the world. In some countries, due to non-existent or inadequate screening, it is often detected at late stages, making standard treatment options often absent or unaffordable. It is a deadly disease that could benefit from early detection approaches. It is usually done by cytological exams which consist of visually inspecting the nuclei searching for morphological alteration. Since it is done by humans, naturally, some subjectivity is introduced. Computational methods could be used to reduce this, where the first stage of the process would be the nuclei segmentation. In this context, we present a complete pipeline for the segmentation of nuclei in Feulgen-stained images using Convolutional Neural Networks. Here we show the entire process of segmentation, since the collection of the samples, passing through pre-processing, training the network, post-processing and results evaluation. We achieved an overall IoU of 0.78, showing the affordability of the approach of nuclei segmentation on Feulgen-stained images. The code is available in: https://github.com/luizbuschetto/feulgen_nuclei_segmentation.

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