Related papers: Noisy Adaptive Group Testing using Bayesian Sequential Experimental Design

Noisy Adaptive Group Testing using Bayesian Sequential Experimental Design

URL: http://arxiv.org/abs/2004.12508v6
Date: Wed, 22 Jul 2020 08:19:33 GMT
Title: Noisy Adaptive Group Testing using Bayesian Sequential Experimental Design
Authors: Marco Cuturi, Olivier Teboul, Quentin Berthet, Arnaud Doucet, Jean-Philippe Vert
Abstract summary: When the infection prevalence of a disease is low, Dorfman showed 80 years ago that testing groups of people can prove more efficient than testing people individually. Our goal in this paper is to propose new group testing algorithms that can operate in a noisy setting.
Score: 63.48989885374238
License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
Abstract: When the infection prevalence of a disease is low, Dorfman showed 80 years ago that testing groups of people can prove more efficient than testing people individually. Our goal in this paper is to propose new group testing algorithms that can operate in a noisy setting (tests can be mistaken) to decide adaptively (looking at past results) which groups to test next, with the goal to converge to a good detection, as quickly, and with as few tests as possible. We cast this problem as a Bayesian sequential experimental design problem. Using the posterior distribution of infection status vectors for $n$ patients, given observed tests carried out so far, we seek to form groups that have a maximal utility. We consider utilities such as mutual information, but also quantities that have a more direct relevance to testing, such as the AUC of the ROC curve of the test. Practically, the posterior distributions on $\{0,1\}^n$ are approximated by sequential Monte Carlo (SMC) samplers and the utility maximized by a greedy optimizer. Our procedures show in simulations significant improvements over both adaptive and non-adaptive baselines, and are far more efficient than individual tests when disease prevalence is low. Additionally, we show empirically that loopy belief propagation (LBP), widely regarded as the SoTA decoder to decide whether an individual is infected or not given previous tests, can be unreliable and exhibit oscillatory behavior. Our SMC decoder is more reliable, and can improve the performance of other group testing algorithms.