Higher-order interactions in statistical physics and machine learning: A
model-independent solution to the inverse problem at equilibrium
- URL: http://arxiv.org/abs/2006.06010v2
- Date: Tue, 29 Dec 2020 23:04:57 GMT
- Title: Higher-order interactions in statistical physics and machine learning: A
model-independent solution to the inverse problem at equilibrium
- Authors: Sjoerd Viktor Beentjes, Ava Khamseh
- Abstract summary: inverse problem of inferring pair-wise and higher-order interactions in complex systems is fundamental to many fields.
We introduce a universal, model-independent, and fundamentally unbiased estimator of all-order symmetric interactions.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: The problem of inferring pair-wise and higher-order interactions in complex
systems involving large numbers of interacting variables, from observational
data, is fundamental to many fields. Known to the statistical physics community
as the inverse problem, it has become accessible in recent years due to real
and simulated 'big' data being generated. Current approaches to the inverse
problem rely on parametric assumptions, physical approximations, e.g.
mean-field theory, and ignoring higher-order interactions which may lead to
biased or incorrect estimates. We bypass these shortcomings using a
cross-disciplinary approach and demonstrate that none of these assumptions and
approximations are necessary: We introduce a universal, model-independent, and
fundamentally unbiased estimator of all-order symmetric interactions, via the
non-parametric framework of Targeted Learning, a subfield of mathematical
statistics. Due to its universality, our definition is readily applicable to
any system at equilibrium with binary and categorical variables, be it magnetic
spins, nodes in a neural network, or protein networks in biology. Our approach
is targeted, not requiring fitting unnecessary parameters. Instead, it expends
all data on estimating interactions, hence substantially increasing accuracy.
We demonstrate the generality of our technique both analytically and
numerically on (i) the 2-dimensional Ising model, (ii) an Ising-like model with
4-point interactions, (iii) the Restricted Boltzmann Machine, and (iv)
simulated individual-level human DNA variants and representative traits. The
latter demonstrates the applicability of this approach to discover epistatic
interactions causal of disease in population biomedicine.
Related papers
- Seeing Unseen: Discover Novel Biomedical Concepts via
Geometry-Constrained Probabilistic Modeling [53.7117640028211]
We present a geometry-constrained probabilistic modeling treatment to resolve the identified issues.
We incorporate a suite of critical geometric properties to impose proper constraints on the layout of constructed embedding space.
A spectral graph-theoretic method is devised to estimate the number of potential novel classes.
arXiv Detail & Related papers (2024-03-02T00:56:05Z) - Interaction Measures, Partition Lattices and Kernel Tests for High-Order
Interactions [1.9457612782595313]
Non-trivial dependencies between groups of more than two variables can play a significant role in the analysis and modelling of such systems.
We introduce a hierarchy of $d$-order ($d geq 2$) interaction measures, increasingly inclusive of possible factorisations of the joint probability distribution.
We also establish mathematical links with lattice theory, which elucidate the derivation of the interaction measures and their composite permutation tests.
arXiv Detail & Related papers (2023-06-01T16:59:37Z) - Nonparametric Identifiability of Causal Representations from Unknown
Interventions [63.1354734978244]
We study causal representation learning, the task of inferring latent causal variables and their causal relations from mixtures of the variables.
Our goal is to identify both the ground truth latents and their causal graph up to a set of ambiguities which we show to be irresolvable from interventional data.
arXiv Detail & Related papers (2023-06-01T10:51:58Z) - Capturing dynamical correlations using implicit neural representations [85.66456606776552]
We develop an artificial intelligence framework which combines a neural network trained to mimic simulated data from a model Hamiltonian with automatic differentiation to recover unknown parameters from experimental data.
In doing so, we illustrate the ability to build and train a differentiable model only once, which then can be applied in real-time to multi-dimensional scattering data.
arXiv Detail & Related papers (2023-04-08T07:55:36Z) - Learning Physical Dynamics with Subequivariant Graph Neural Networks [99.41677381754678]
Graph Neural Networks (GNNs) have become a prevailing tool for learning physical dynamics.
Physical laws abide by symmetry, which is a vital inductive bias accounting for model generalization.
Our model achieves on average over 3% enhancement in contact prediction accuracy across 8 scenarios on Physion and 2X lower rollout MSE on RigidFall.
arXiv Detail & Related papers (2022-10-13T10:00:30Z) - Complexity from Adaptive-Symmetries Breaking: Global Minima in the
Statistical Mechanics of Deep Neural Networks [0.0]
An antithetical concept, adaptive symmetry, to conservative symmetry in physics is proposed to understand the deep neural networks (DNNs)
We characterize the optimization process of a DNN system as an extended adaptive-symmetry-breaking process.
More specifically, this process is characterized by a statistical-mechanical model that could be appreciated as a generalization of statistics physics.
arXiv Detail & Related papers (2022-01-03T09:06:44Z) - The Causal Neural Connection: Expressiveness, Learnability, and
Inference [125.57815987218756]
An object called structural causal model (SCM) represents a collection of mechanisms and sources of random variation of the system under investigation.
In this paper, we show that the causal hierarchy theorem (Thm. 1, Bareinboim et al., 2020) still holds for neural models.
We introduce a special type of SCM called a neural causal model (NCM), and formalize a new type of inductive bias to encode structural constraints necessary for performing causal inferences.
arXiv Detail & Related papers (2021-07-02T01:55:18Z) - Data-driven discovery of interacting particle systems using Gaussian
processes [3.0938904602244346]
We study the data-driven discovery of distance-based interaction laws in second-order interacting particle systems.
We propose a learning approach that models the latent interaction kernel functions as Gaussian processes.
Numerical results on systems that exhibit different collective behaviors demonstrate efficient learning of our approach from scarce noisy trajectory data.
arXiv Detail & Related papers (2021-06-04T22:00:53Z) - Orthogonal Statistical Inference for Multimodal Data Analysis [5.010425616264462]
Multimodal imaging has transformed neuroscience research.
It is difficult to combine the merits of interpretability attributed to a simple association model and flexibility achieved by a highly adaptive nonlinear model.
arXiv Detail & Related papers (2021-03-12T05:04:31Z) - Learning Theory for Inferring Interaction Kernels in Second-Order
Interacting Agent Systems [17.623937769189364]
We develop a complete learning theory which establishes strong consistency and optimal nonparametric min-max rates of convergence for the estimators.
The numerical algorithm presented to build the estimators is parallelizable, performs well on high-dimensional problems, and is demonstrated on complex dynamical systems.
arXiv Detail & Related papers (2020-10-08T02:07:53Z) - Machine learning for causal inference: on the use of cross-fit
estimators [77.34726150561087]
Doubly-robust cross-fit estimators have been proposed to yield better statistical properties.
We conducted a simulation study to assess the performance of several estimators for the average causal effect (ACE)
When used with machine learning, the doubly-robust cross-fit estimators substantially outperformed all of the other estimators in terms of bias, variance, and confidence interval coverage.
arXiv Detail & Related papers (2020-04-21T23:09:55Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.