Identification of brain states, transitions, and communities using
functional MRI
- URL: http://arxiv.org/abs/2101.10617v1
- Date: Tue, 26 Jan 2021 08:10:00 GMT
- Title: Identification of brain states, transitions, and communities using
functional MRI
- Authors: Lingbin Bian, Tiangang Cui, B.T. Thomas Yeo, Alex Fornito, Adeel Razi
and Jonathan Keith
- Abstract summary: We propose a Bayesian model-based characterization of latent brain states and showcase a novel method based on posterior predictive discrepancy.
Our results obtained through an analysis of task-fMRI data show appropriate lags between external task demands and change-points between brain states.
- Score: 0.5872014229110214
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Brain function relies on a precisely coordinated and dynamic balance between
the functional integration and segregation of distinct neural systems.
Characterizing the way in which neural systems reconfigure their interactions
to give rise to distinct but hidden brain states remains an open challenge. In
this paper, we propose a Bayesian model-based characterization of latent brain
states and showcase a novel method based on posterior predictive discrepancy
using the latent block model to detect transitions between latent brain states
in blood oxygen level-dependent (BOLD) time series. The set of estimated
parameters in the model includes a latent label vector that assigns network
nodes to communities, and also block model parameters that reflect the weighted
connectivity within and between communities. Besides extensive in-silico model
evaluation, we also provide empirical validation (and replication) using the
Human Connectome Project (HCP) dataset of 100 healthy adults. Our results
obtained through an analysis of task-fMRI data during working memory
performance show appropriate lags between external task demands and
change-points between brain states, with distinctive community patterns
distinguishing fixation, low-demand and high-demand task conditions.
Related papers
- BrainMAE: A Region-aware Self-supervised Learning Framework for Brain Signals [11.030708270737964]
We propose Brain Masked Auto-Encoder (BrainMAE) for learning representations directly from fMRI time-series data.
BrainMAE consistently outperforms established baseline methods by significant margins in four distinct downstream tasks.
arXiv Detail & Related papers (2024-06-24T19:16:24Z) - Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation [56.34634121544929]
In this study, we first construct the brain-effective network via the dynamic causal model.
We then introduce an interpretable graph learning framework termed Spatio-Temporal Embedding ODE (STE-ODE)
This framework incorporates specifically designed directed node embedding layers, aiming at capturing the dynamic interplay between structural and effective networks.
arXiv Detail & Related papers (2024-05-21T20:37:07Z) - DSAM: A Deep Learning Framework for Analyzing Temporal and Spatial Dynamics in Brain Networks [4.041732967881764]
Most rs-fMRI studies compute a single static functional connectivity matrix across brain regions of interest.
These approaches are at risk of oversimplifying brain dynamics and lack proper consideration of the goal at hand.
We propose a novel interpretable deep learning framework that learns goal-specific functional connectivity matrix directly from time series.
arXiv Detail & Related papers (2024-05-19T23:35:06Z) - MindBridge: A Cross-Subject Brain Decoding Framework [60.58552697067837]
Brain decoding aims to reconstruct stimuli from acquired brain signals.
Currently, brain decoding is confined to a per-subject-per-model paradigm.
We present MindBridge, that achieves cross-subject brain decoding by employing only one model.
arXiv Detail & Related papers (2024-04-11T15:46:42Z) - The Expressive Leaky Memory Neuron: an Efficient and Expressive Phenomenological Neuron Model Can Solve Long-Horizon Tasks [64.08042492426992]
We introduce the Expressive Memory (ELM) neuron model, a biologically inspired model of a cortical neuron.
Our ELM neuron can accurately match the aforementioned input-output relationship with under ten thousand trainable parameters.
We evaluate it on various tasks with demanding temporal structures, including the Long Range Arena (LRA) datasets.
arXiv Detail & Related papers (2023-06-14T13:34:13Z) - Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI [55.78588835407174]
We propose a method that reformulates the generation task of diffusion models as a patch-based estimation of healthy brain anatomy.
We evaluate our approach on data of tumors and multiple sclerosis lesions and demonstrate a relative improvement of 25.1% compared to existing baselines.
arXiv Detail & Related papers (2023-03-07T09:40:22Z) - Cross-Frequency Coupling Increases Memory Capacity in Oscillatory Neural
Networks [69.42260428921436]
Cross-frequency coupling (CFC) is associated with information integration across populations of neurons.
We construct a model of CFC which predicts a computational role for observed $theta - gamma$ oscillatory circuits in the hippocampus and cortex.
We show that the presence of CFC increases the memory capacity of a population of neurons connected by plastic synapses.
arXiv Detail & Related papers (2022-04-05T17:13:36Z) - Ranking of Communities in Multiplex Spatiotemporal Models of Brain
Dynamics [0.0]
We propose an interpretation of neural HMMs as multiplex brain state graph models we term Hidden Markov Graph Models (HMs)
This interpretation allows for dynamic brain activity to be analysed using the full repertoire of network analysis techniques.
We produce a new tool for determining important communities of brain regions using a random walk-based procedure.
arXiv Detail & Related papers (2022-03-17T12:14:09Z) - Mixed Effects Neural ODE: A Variational Approximation for Analyzing the
Dynamics of Panel Data [50.23363975709122]
We propose a probabilistic model called ME-NODE to incorporate (fixed + random) mixed effects for analyzing panel data.
We show that our model can be derived using smooth approximations of SDEs provided by the Wong-Zakai theorem.
We then derive Evidence Based Lower Bounds for ME-NODE, and develop (efficient) training algorithms.
arXiv Detail & Related papers (2022-02-18T22:41:51Z) - Spatio-Temporal Graph Convolution for Resting-State fMRI Analysis [11.85489505372321]
We train a-temporal graph convolutional network (ST-GCN) on short sub-sequences of the BOLD time series to model the non-stationary nature of functional connectivity.
St-GCN is significantly more accurate than common approaches in predicting gender and age based on BOLD signals.
arXiv Detail & Related papers (2020-03-24T01:56:50Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.