Fibro-CoSANet: Pulmonary Fibrosis Prognosis Prediction using a
Convolutional Self Attention Network
- URL: http://arxiv.org/abs/2104.05889v1
- Date: Tue, 13 Apr 2021 01:44:08 GMT
- Title: Fibro-CoSANet: Pulmonary Fibrosis Prognosis Prediction using a
Convolutional Self Attention Network
- Authors: Zabir Al Nazi, Fazla Rabbi Mashrur, Md Amirul Islam, Shumit Saha
- Abstract summary: Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung disease that causes lung function decline by lung tissue scarring.
We propose Fibro-CoSANet, a novel end-to-end multi-modal learning-based approach to predict the forced vital capacity decline.
- Score: 6.455738253742997
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung
disease that causes lung function decline by lung tissue scarring. Although
lung function decline is assessed by the forced vital capacity (FVC),
determining the accurate progression of IPF remains a challenge. To address
this challenge, we proposed Fibro-CoSANet, a novel end-to-end multi-modal
learning-based approach, to predict the FVC decline. Fibro-CoSANet utilized CT
images and demographic information in convolutional neural network frameworks
with a stacked attention layer. Extensive experiments on the OSIC Pulmonary
Fibrosis Progression Dataset demonstrated the superiority of our proposed
Fibro-CoSANet by achieving the new state-of-the-art modified Laplace
Log-Likelihood score of -6.68. This network may benefit research areas
concerned with designing networks to improve the prognostic accuracy of IPF.
The source-code for Fibro-CoSANet is available at:
\url{https://github.com/zabir-nabil/Fibro-CoSANet}.
Related papers
- Fuzzy Attention-based Border Rendering Network for Lung Organ Segmentation [12.239237740592639]
This paper introduces an effective lung organ segmentation method called Fuzzy Attention-based Border Rendering (FABR) network.
Unlike prior top-tier methods that operate on all regular dense points, our FABR depicts lung organ regions as cube-trees, focusing only on recycle-sampled border vulnerable points.
All experimental results, on four challenging datasets of airway & artery, demonstrate that our method can achieve the favorable performance significantly.
arXiv Detail & Related papers (2024-06-23T18:47:51Z) - COPD-FlowNet: Elevating Non-invasive COPD Diagnosis with CFD Simulations [0.9012198585960443]
COPDFlowNet generates synthetic Computational Fluid Dynamics (CFD) velocity flow field images specific to the trachea of COPD patients.
COPDFlowNet incorporates a custom Convolutional Neural Network (CNN) architecture to predict the location of the obstruction site.
arXiv Detail & Related papers (2023-12-17T15:09:20Z) - Automatic segmentation of lung findings in CT and application to Long
COVID [38.69538648742266]
S-MEDSeg is a deep learning based approach for accurate segmentation of lung lesions in chest CT images.
S-MEDSeg combines a pre-trained EfficientNet backbone, bidirectional feature pyramid network, and modern network advancements.
arXiv Detail & Related papers (2023-10-13T23:42:43Z) - Fuzzy Attention Neural Network to Tackle Discontinuity in Airway
Segmentation [67.19443246236048]
Airway segmentation is crucial for the examination, diagnosis, and prognosis of lung diseases.
Some small-sized airway branches (e.g., bronchus and terminaloles) significantly aggravate the difficulty of automatic segmentation.
This paper presents an efficient method for airway segmentation, comprising a novel fuzzy attention neural network and a comprehensive loss function.
arXiv Detail & Related papers (2022-09-05T16:38:13Z) - Airway measurement by refinement of synthetic images improves mortality
prediction in idiopathic pulmonary fibrosis [1.3290985445255554]
We propose synthesising airways by style transfer using perceptual losses to train our model, Airway Transfer Network (ATN)
ATN was shown to be quicker and easier to train than state-of-the-art GAN-based network (simGAN)
ATN-based airway measurements were found to be consistently stronger predictors of mortality than simGAN-derived airway metrics on IPF CTs.
arXiv Detail & Related papers (2022-08-30T10:48:48Z) - FastCPH: Efficient Survival Analysis for Neural Networks [57.03275837523063]
We propose FastCPH, a new method that runs in linear time and supports both the standard Breslow and Efron methods for tied events.
We also demonstrate the performance of FastCPH combined with LassoNet, a neural network that provides interpretability through feature sparsity.
arXiv Detail & Related papers (2022-08-21T03:35:29Z) - BronchusNet: Region and Structure Prior Embedded Representation Learning
for Bronchus Segmentation and Classification [53.53758990624962]
We propose a region and structure prior embedded framework named BronchusNet to achieve accurate bronchial analysis.
For bronchus segmentation, we propose an adaptive hard region-aware UNet that incorporates multi-level prior guidance of hard pixel-wise samples.
For the classification of bronchial branches, we propose a hybrid point-voxel graph learning module.
arXiv Detail & Related papers (2022-05-14T02:32:33Z) - Fibrosis-Net: A Tailored Deep Convolutional Neural Network Design for
Prediction of Pulmonary Fibrosis Progression from Chest CT Images [59.622239796473885]
Pulmonary fibrosis is a chronic lung disease that causes irreparable lung tissue scarring and damage, resulting in progressive loss in lung capacity and no known cure.
We introduce Fibrosis-Net, a deep convolutional neural network design tailored for the prediction of pulmonary fibrosis progression from chest CT images.
arXiv Detail & Related papers (2021-03-06T02:16:41Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Inf-Net: Automatic COVID-19 Lung Infection Segmentation from CT Images [152.34988415258988]
Automated detection of lung infections from computed tomography (CT) images offers a great potential to augment the traditional healthcare strategy for tackling COVID-19.
segmenting infected regions from CT slices faces several challenges, including high variation in infection characteristics, and low intensity contrast between infections and normal tissues.
To address these challenges, a novel COVID-19 Deep Lung Infection Network (Inf-Net) is proposed to automatically identify infected regions from chest CT slices.
arXiv Detail & Related papers (2020-04-22T07:30:56Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.