Graph Neural Networks in Network Neuroscience
- URL: http://arxiv.org/abs/2106.03535v1
- Date: Mon, 7 Jun 2021 11:49:57 GMT
- Title: Graph Neural Networks in Network Neuroscience
- Authors: Alaa Bessadok, Mohamed Ali Mahjoub and Islem Rekik
- Abstract summary: graph neural network (GNN) provides a clever way of learning the deep graph structure.
GNN-based methods have been used in several applications related to brain graphs such as missing brain graph synthesis and disease classification.
We conclude by charting a path toward a better application of GNN models in network neuroscience field for neurological disorder diagnosis and population graph integration.
- Score: 1.6114012813668934
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Noninvasive medical neuroimaging has yielded many discoveries about the brain
connectivity. Several substantial techniques mapping morphological, structural
and functional brain connectivities were developed to create a comprehensive
road map of neuronal activities in the human brain -namely brain graph. Relying
on its non-Euclidean data type, graph neural network (GNN) provides a clever
way of learning the deep graph structure and it is rapidly becoming the
state-of-the-art leading to enhanced performance in various network
neuroscience tasks. Here we review current GNN-based methods, highlighting the
ways that they have been used in several applications related to brain graphs
such as missing brain graph synthesis and disease classification. We conclude
by charting a path toward a better application of GNN models in network
neuroscience field for neurological disorder diagnosis and population graph
integration. The list of papers cited in our work is available at
https://github.com/basiralab/GNNs-in-Network-Neuroscience.
Related papers
- Graph Neural Networks for Brain Graph Learning: A Survey [53.74244221027981]
Graph neural networks (GNNs) have demonstrated a significant advantage in mining graph-structured data.
GNNs to learn brain graph representations for brain disorder analysis has recently gained increasing attention.
In this paper, we aim to bridge this gap by reviewing brain graph learning works that utilize GNNs.
arXiv Detail & Related papers (2024-06-01T02:47:39Z) - DBGDGM: Dynamic Brain Graph Deep Generative Model [63.23390833353625]
Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data.
It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction.
Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs.
We propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings.
arXiv Detail & Related papers (2023-01-26T20:45:30Z) - DynDepNet: Learning Time-Varying Dependency Structures from fMRI Data
via Dynamic Graph Structure Learning [58.94034282469377]
We propose DynDepNet, a novel method for learning the optimal time-varying dependency structure of fMRI data induced by downstream prediction tasks.
Experiments on real-world fMRI datasets, for the task of sex classification, demonstrate that DynDepNet achieves state-of-the-art results.
arXiv Detail & Related papers (2022-09-27T16:32:11Z) - Contrastive Brain Network Learning via Hierarchical Signed Graph Pooling
Model [64.29487107585665]
Graph representation learning techniques on brain functional networks can facilitate the discovery of novel biomarkers for clinical phenotypes and neurodegenerative diseases.
Here, we propose an interpretable hierarchical signed graph representation learning model to extract graph-level representations from brain functional networks.
In order to further improve the model performance, we also propose a new strategy to augment functional brain network data for contrastive learning.
arXiv Detail & Related papers (2022-07-14T20:03:52Z) - Visualizing Deep Neural Networks with Topographic Activation Maps [1.1470070927586014]
We introduce and compare methods to obtain a topographic layout of neurons in a Deep Neural Network layer.
We demonstrate how to use topographic activation maps to identify errors or encoded biases and to visualize training processes.
arXiv Detail & Related papers (2022-04-07T15:56:44Z) - Deep Reinforcement Learning Guided Graph Neural Networks for Brain
Network Analysis [61.53545734991802]
We propose a novel brain network representation framework, namely BN-GNN, which searches for the optimal GNN architecture for each brain network.
Our proposed BN-GNN improves the performance of traditional GNNs on different brain network analysis tasks.
arXiv Detail & Related papers (2022-03-18T07:05:27Z) - BrainGB: A Benchmark for Brain Network Analysis with Graph Neural
Networks [20.07976837999997]
We present BrainGB, a benchmark for brain network analysis with Graph Neural Networks (GNNs)
BrainGB standardizes brain network construction pipelines for both functional and structural neuroimaging modalities.
We recommend a set of general recipes for effective GNN designs on brain networks.
arXiv Detail & Related papers (2022-03-17T08:31:13Z) - Joint Embedding of Structural and Functional Brain Networks with Graph
Neural Networks for Mental Illness Diagnosis [17.48272758284748]
Graph Neural Networks (GNNs) have become a de facto model for analyzing graph-structured data.
We develop a novel multiview GNN for multimodal brain networks.
In particular, we regard each modality as a view for brain networks and employ contrastive learning for multimodal fusion.
arXiv Detail & Related papers (2021-07-07T13:49:57Z) - Graph Structure of Neural Networks [104.33754950606298]
We show how the graph structure of neural networks affect their predictive performance.
A "sweet spot" of relational graphs leads to neural networks with significantly improved predictive performance.
Top-performing neural networks have graph structure surprisingly similar to those of real biological neural networks.
arXiv Detail & Related papers (2020-07-13T17:59:31Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.