A Search Engine for Discovery of Biomedical Challenges and Directions

• URL: http://arxiv.org/abs/2108.13751v1
• Date: Tue, 31 Aug 2021 11:08:20 GMT
• Title: A Search Engine for Discovery of Biomedical Challenges and Directions
• Authors: Dan Lahav, Jon Saad Falcon, Bailey Kuehl, Sophie Johnson, Sravanthi Parasa, Noam Shomron, Duen Horng Chau, Diyi Yang, Eric Horvitz, Daniel S. Weld and Tom Hope
• Abstract summary: We construct and release an expert-annotated corpus of texts sampled from full-length papers. We focus on a large corpus of interdisciplinary work relating to the COVID-19 pandemic. We apply a model trained on our data to identify challenges and directions across the corpus and build a dedicated search engine for this information.
• Score: 38.72769142277108
• License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
• Abstract: The ability to keep track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts human lives. To address this problem, we present a novel task of extraction and search of scientific challenges and directions, to facilitate rapid knowledge discovery. We construct and release an expert-annotated corpus of texts sampled from full-length papers, labeled with novel semantic categories that generalize across many types of challenges and directions. We focus on a large corpus of interdisciplinary work relating to the COVID-19 pandemic, ranging from biomedicine to areas such as AI and economics. We apply a model trained on our data to identify challenges and directions across the corpus and build a dedicated search engine for this information. In studies with researchers, including those working directly on COVID-19, we outperform a popular scientific search engine in assisting knowledge discovery. Finally, we show that models trained on our resource generalize to the wider biomedical domain, highlighting its broad utility. We make our data, model and search engine publicly available. https://challenges.apps.allenai.org

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