Unique Brain Network Identification Number for Parkinson's Individuals
Using Structural MRI
- URL: http://arxiv.org/abs/2306.01689v2
- Date: Tue, 19 Sep 2023 09:20:48 GMT
- Title: Unique Brain Network Identification Number for Parkinson's Individuals
Using Structural MRI
- Authors: Tanmayee Samantaray, Utsav Gupta, Jitender Saini, and Cota Navin Gupta
- Abstract summary: We propose a novel algorithm called Unique Brain Network Identification Number, UBNIN for encoding the brain networks of individual subjects.
We parcellated each subjects brain volume and constructed an individual adjacency matrix using the correlation between the gray matter volumes of every pair of regions.
The numerical representation UBNIN was observed to be distinct for each individual brain network, which may also be applied to other neuroimaging modalities.
- Score: 0.060379119983736775
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: We propose a novel algorithm called Unique Brain Network Identification
Number, UBNIN for encoding the brain networks of individual subjects. To
realize this objective, we employed structural MRI on 180 Parkinsons disease PD
patients and 70 healthy controls HC from the National Institute of Mental
Health and Neurosciences, India. We parcellated each subjects brain volume and
constructed an individual adjacency matrix using the correlation between the
gray matter volumes of every pair of regions. The unique code is derived from
values representing connections for every node i, weighted by a factor of
2^1-i. The numerical representation UBNIN was observed to be distinct for each
individual brain network, which may also be applied to other neuroimaging
modalities. This model may be implemented as a neural signature of a persons
unique brain connectivity, thereby making it useful for brainprinting
applications. Additionally, we segregated the above datasets into five age
cohorts to study the variation in network topology over age. Sparsity was
adopted as the threshold estimate to binarize each age-based correlation
matrix. For each age cohort, a decreasing trend was observed in the mean
clustering coefficient with increasing sparsity. Significantly different
clustering coefficients were noted in PD between age cohort B and C, C and E,
and in HC between E and B, E and C, E and D, and C and D. Our findings suggest
network connectivity patterns change with age, indicating network disruption
may be due to the underlying neuropathology. Varying clustering coefficients
for different cohorts indicate that information transfer between neighboring
nodes changes with age. This provides evidence of age related brain shrinkage
and network degeneration. We also discuss limitations and provide an
open-access link to software codes and a help file for the entire study.
Related papers
- Brain-Cognition Fingerprinting via Graph-GCCA with Contrastive Learning [28.681229869236393]
longitudinal neuroimaging studies aim to improve the understanding of brain aging and diseases by studying the dynamic interactions between brain function and cognition.
We propose an unsupervised learning model that encodes their relationship via Graph Attention Networks and generalized Correlational Analysis.
To create brain-cognition fingerprints reflecting unique neural and cognitive phenotype of each person, the model also relies on individualized and multimodal contrastive learning.
arXiv Detail & Related papers (2024-09-20T20:36:20Z) - Labeling subtypes in a Parkinson's Cohort using Multifeatures in MRI - Integrating Grey and White Matter Information [0.05311301767110321]
Mutual K-Nearest Neighbor (MKNN)-based thresholding for brain network analysis.
Structural MRI data from 180 Parkinsons patients and 70 controls from the NIMHANS, India were analyzed.
arXiv Detail & Related papers (2024-03-26T02:32:52Z) - Towards a Foundation Model for Brain Age Prediction using coVariance
Neural Networks [102.75954614946258]
Increasing brain age with respect to chronological age can reflect increased vulnerability to neurodegeneration and cognitive decline.
NeuroVNN is pre-trained as a regression model on healthy population to predict chronological age.
NeuroVNN adds anatomical interpretability to brain age and has a scale-free' characteristic that allows its transference to datasets curated according to any arbitrary brain atlas.
arXiv Detail & Related papers (2024-02-12T14:46:31Z) - SFCNeXt: a simple fully convolutional network for effective brain age
estimation with small sample size [10.627447275777609]
Deep neural networks (DNN) have been designed to predict the chronological age of a healthy brain from T1-weighted magnetic resonance images (T1 MRIs)
Recent DNN models for brain age estimations usually rely too much on large sample sizes and complex network structures for multi-stage feature refinement.
This paper proposes a simple fully convolutional network (SFCNeXt) for brain age estimation in small-sized cohorts with biased age distributions.
arXiv Detail & Related papers (2023-05-30T06:11:38Z) - Explainable Brain Age Prediction using coVariance Neural Networks [94.81523881951397]
We propose an explanation-driven and anatomically interpretable framework for brain age prediction using cortical thickness features.
Specifically, our brain age prediction framework extends beyond the coarse metric of brain age gap in Alzheimer's disease (AD)
We make two important observations: VNNs can assign anatomical interpretability to elevated brain age gap in AD by identifying contributing brain regions.
arXiv Detail & Related papers (2023-05-27T22:28:25Z) - Deep learning reveals the common spectrum underlying multiple brain
disorders in youth and elders from brain functional networks [53.257804915263165]
Brain disorders in the early and late life of humans potentially share pathological alterations in brain functions.
Key evidence from neuroimaging data for pathological commonness remains unrevealed.
We build a deep learning model, using multi-site functional magnetic resonance imaging data, for classifying 5 different brain disorders from healthy controls.
arXiv Detail & Related papers (2023-02-23T09:22:05Z) - DBGDGM: Dynamic Brain Graph Deep Generative Model [63.23390833353625]
Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data.
It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction.
Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs.
We propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings.
arXiv Detail & Related papers (2023-01-26T20:45:30Z) - Predicting Brain Age using Transferable coVariance Neural Networks [119.45320143101381]
We have recently studied covariance neural networks (VNNs) that operate on sample covariance matrices.
In this paper, we demonstrate the utility of VNNs in inferring brain age using cortical thickness data.
Our results show that VNNs exhibit multi-scale and multi-site transferability for inferring brain age
In the context of brain age in Alzheimer's disease (AD), our experiments show that i) VNN outputs are interpretable as brain age predicted using VNNs is significantly elevated for AD with respect to healthy subjects.
arXiv Detail & Related papers (2022-10-28T18:58:34Z) - BrainNetGAN: Data augmentation of brain connectivity using generative
adversarial network for dementia classification [9.312868504719193]
Alzheimer's disease is the most common age-related dementia.
Brain MRI offers a noninvasive biomarker to detect brain aging.
Alzheimer's disease is the most common age-related dementia.
arXiv Detail & Related papers (2021-03-10T23:44:53Z) - A Graph Gaussian Embedding Method for Predicting Alzheimer's Disease
Progression with MEG Brain Networks [59.15734147867412]
Characterizing the subtle changes of functional brain networks associated with Alzheimer's disease (AD) is important for early diagnosis and prediction of disease progression.
We developed a new deep learning method, termed multiple graph Gaussian embedding model (MG2G)
We used MG2G to detect the intrinsic latent dimensionality of MEG brain networks, predict the progression of patients with mild cognitive impairment (MCI) to AD, and identify brain regions with network alterations related to MCI.
arXiv Detail & Related papers (2020-05-08T02:29:24Z) - Causality based Feature Fusion for Brain Neuro-Developmental Analysis [26.218572787292427]
We propose to add the directional flow of information during brain maturation.
The motivation is that the inclusion of causal interaction may further discriminate brain connections between two age groups.
Our findings indicated that the strength of connections was significantly higher in young adults relative to children.
arXiv Detail & Related papers (2020-01-22T17:38:42Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.