DLiPath: A Benchmark for the Comprehensive Assessment of Donor Liver Based on Histopathological Image Dataset
- URL: http://arxiv.org/abs/2506.03185v1
- Date: Fri, 30 May 2025 12:13:00 GMT
- Title: DLiPath: A Benchmark for the Comprehensive Assessment of Donor Liver Based on Histopathological Image Dataset
- Authors: Liangrui Pan, Xingchen Li, Zhongyi Chen, Ling Chu, Shaoliang Peng,
- Abstract summary: Comprehensive evaluation of donor liver biopsies provides crucial information for accepting or discarding potential grafts.<n>Features in donor liver biopsies, such as portal tract fibrosis, total steatosis, macrovesicular steatosis, ballooning are correlated with transplant outcomes.<n>To address this, we introduce DLiPath, the first benchmark for comprehensive donor liver assessment.
- Score: 3.5306983515338706
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Pathologists comprehensive evaluation of donor liver biopsies provides crucial information for accepting or discarding potential grafts. However, rapidly and accurately obtaining these assessments intraoperatively poses a significant challenge for pathologists. Features in donor liver biopsies, such as portal tract fibrosis, total steatosis, macrovesicular steatosis, and hepatocellular ballooning are correlated with transplant outcomes, yet quantifying these indicators suffers from substantial inter- and intra-observer variability. To address this, we introduce DLiPath, the first benchmark for comprehensive donor liver assessment based on a histopathology image dataset. We collected and publicly released 636 whole slide images from 304 donor liver patients at the Department of Pathology, the Third Xiangya Hospital, with expert annotations for key pathological features (including cholestasis, portal tract fibrosis, portal inflammation, total steatosis, macrovesicular steatosis, and hepatocellular ballooning). We selected nine state-of-the-art multiple-instance learning (MIL) models based on the DLiPath dataset as baselines for extensive comparative analysis. The experimental results demonstrate that several MIL models achieve high accuracy across donor liver assessment indicators on DLiPath, charting a clear course for future automated and intelligent donor liver assessment research. Data and code are available at https://github.com/panliangrui/ACM_MM_2025.
Related papers
- Large Scale MRI Collection and Segmentation of Cirrhotic Liver [1.3157208364269697]
Liver cirrhosis is the end stage of chronic liver disease, characterized by extensive fibrosis and nodular regeneration.<n>Cirrhotic liver analysis presents substantial challenges due to morphological alterations and heterogeneous signal characteristics.<n>We present CirrMRI600+, the first comprehensive dataset comprising 628 high-resolution abdominal MRI scans.
arXiv Detail & Related papers (2024-10-06T20:24:41Z) - Liver Fat Quantification Network with Body Shape [4.642852520437342]
We propose a deep neural network to estimate the percentage of liver fat using only body shapes.
The proposed is composed of a flexible baseline network and a lightweight Attention module.
The results verify that our proposed method yields state-of-the-art performance with Root mean squared error (RMSE) of 5.26% and R-Squared value over 0.8.
arXiv Detail & Related papers (2024-05-18T20:22:22Z) - Fairly Predicting Graft Failure in Liver Transplant for Organ Assigning [61.30094367351618]
Liver transplant is an essential therapy performed for severe liver diseases.
Machine learning models could be unfair and trigger bias against certain groups of people.
This work proposes a fair machine learning framework targeting graft failure prediction in liver transplant.
arXiv Detail & Related papers (2023-02-18T18:24:58Z) - Learning to diagnose cirrhosis from radiological and histological labels
with joint self and weakly-supervised pretraining strategies [62.840338941861134]
We propose to leverage transfer learning from large datasets annotated by radiologists, to predict the histological score available on a small annex dataset.
We compare different pretraining methods, namely weakly-supervised and self-supervised ones, to improve the prediction of the cirrhosis.
This method outperforms the baseline classification of the METAVIR score, reaching an AUC of 0.84 and a balanced accuracy of 0.75.
arXiv Detail & Related papers (2023-02-16T17:06:23Z) - CoRe: An Automated Pipeline for The Prediction of Liver Resection
Complexity from Preoperative CT Scans [53.561797148529664]
Tumors located in critical positions are known to complexify liver resections.
CoRe is an automated medical image processing pipeline for the prediction of postoperative LR complexity.
arXiv Detail & Related papers (2022-10-15T15:29:24Z) - Lymphocyte Classification in Hyperspectral Images of Ovarian Cancer
Tissue Biopsy Samples [94.37521840642141]
We present a machine learning pipeline to segment white blood cell pixels in hyperspectral images of biopsy cores.
These cells are clinically important for diagnosis, but some prior work has struggled to incorporate them due to difficulty obtaining precise pixel labels.
arXiv Detail & Related papers (2022-03-23T00:58:27Z) - Edge-competing Pathological Liver Vessel Segmentation with Limited
Labels [61.38846803229023]
There is no algorithm as yet tailored for the MVI detection from pathological images.
This paper collects the first pathological liver image dataset containing 522 whole slide images with labels of vessels, MVI, and carcinoma grades.
We propose an Edge-competing Vessel Network (EVS-Net) which contains a segmentation network and two edge segmentation discriminators.
arXiv Detail & Related papers (2021-08-01T07:28:32Z) - Realistic Ultrasound Image Synthesis for Improved Classification of
Liver Disease [54.69792905238048]
convolutional neural networks (CNNs) have been investigated for classifying liver disease from ultrasound (US) data.
We propose a novel generative adversarial network (GAN) architecture for realistic diseased and healthy liver US image synthesis.
arXiv Detail & Related papers (2021-07-27T12:37:19Z) - Multi-Slice Low-Rank Tensor Decomposition Based Multi-Atlas
Segmentation: Application to Automatic Pathological Liver CT Segmentation [4.262342157729123]
Liver segmentation from abdominal CT images is an essential step for liver cancer computer-aided diagnosis and surgical planning.
Currently, the accuracy and robustness of existing liver segmentation methods cannot meet the requirements of clinical applications.
We propose a novel low-rank tensor decomposition (LRTD) based multi-atlas segmentation (MAS) framework that achieves accurate and robust pathological liver segmentation of CT images.
arXiv Detail & Related papers (2021-02-24T04:09:39Z) - Online Domain Adaptation for Continuous Cross-Subject Liver Viability
Evaluation Based on Irregular Thermal Data [0.47267770920095525]
We use irregular thermal data of pure liver region, and the cross-subject liver evaluation information for real-time evaluation of new liver's viability.
Our proposed framework is applied to the liver procurement data, and the evaluation of the liver viability accurately.
arXiv Detail & Related papers (2020-11-24T21:42:19Z) - Deep Learning based NAS Score and Fibrosis Stage Prediction from CT and
Pathology Data [4.506304887966763]
Non-Alcoholic Fatty Liver Disease (NAFLD) is becoming increasingly prevalent in the world population.
We propose a novel method to automatically predict NAS score and fibrosis stage from CT data.
We also present a method to combine the information from CT and H&E stained pathology data to improve the performance of NAS score and fibrosis stage prediction.
arXiv Detail & Related papers (2020-09-22T17:02:31Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.