Augmented Structure Preserving Neural Networks for cell biomechanics
- URL: http://arxiv.org/abs/2509.05388v1
- Date: Fri, 05 Sep 2025 07:32:50 GMT
- Title: Augmented Structure Preserving Neural Networks for cell biomechanics
- Authors: Juan Olalla-Pombo, Alberto Badías, Miguel Ángel Sanz-Gómez, José María Benítez, Francisco Javier Montáns,
- Abstract summary: We present a new approach that combines Structure Preserving Neural Networks, which study cell movements as a purely mechanical system, with other Machine Learning tools.<n>This new model, tested on simulated and real cell migration cases, predicts complete cell trajectories following a roll-out policy with a high level of accuracy.
- Score: 2.38142799291692
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Cell biomechanics involve a great number of complex phenomena that are fundamental to the evolution of life itself and other associated processes, ranging from the very early stages of embryo-genesis to the maintenance of damaged structures or the growth of tumors. Given the importance of such phenomena, increasing research has been dedicated to their understanding, but the many interactions between them and their influence on the decisions of cells as a collective network or cluster remain unclear. We present a new approach that combines Structure Preserving Neural Networks, which study cell movements as a purely mechanical system, with other Machine Learning tools (Artificial Neural Networks), which allow taking into consideration environmental factors that can be directly deduced from an experiment with Computer Vision techniques. This new model, tested on simulated and real cell migration cases, predicts complete cell trajectories following a roll-out policy with a high level of accuracy. This work also includes a mitosis event prediction model based on Neural Networks architectures which makes use of the same observed features.
Related papers
- Learning noisy tissue dynamics across time scales [0.0]
We introduce a biomimetic machine learning framework capable of inferring noisy multicellular dynamics directly from experimental movies.<n>This generative model combines graph neural networks, normalizing flows and WaveNet algorithms to represent tissues as neural differential equations.<n>We show that our model not only captures cell motion but also predicts the evolution of cell states in their division cycle.
arXiv Detail & Related papers (2025-10-21T21:33:54Z) - NOBLE -- Neural Operator with Biologically-informed Latent Embeddings to Capture Experimental Variability in Biological Neuron Models [68.89389652724378]
NOBLE is a neural operator framework that learns a mapping from a continuous frequency-modulated embedding of interpretable neuron features to the somatic voltage response induced by current injection.<n>It predicts distributions of neural dynamics accounting for the intrinsic experimental variability.<n>NOBLE is the first scaled-up deep learning framework validated on real experimental data.
arXiv Detail & Related papers (2025-06-05T01:01:18Z) - Engineering morphogenesis of cell clusters with differentiable programming [2.0690546196799042]
We use recent advances in automatic differentiation to discover local interaction rules and genetic networks.<n>We show that one can learn the parameters governing cell interactions in the form of interpretable genetic networks.
arXiv Detail & Related papers (2024-07-08T18:05:11Z) - Learning Dynamics from Multicellular Graphs with Deep Neural Networks [7.263827692589625]
We show that using a graph neural network (GNN), the motion of multicellular collectives can be inferred from a static snapshot of cell positions.
arXiv Detail & Related papers (2024-01-22T18:36:29Z) - Brain-Inspired Machine Intelligence: A Survey of
Neurobiologically-Plausible Credit Assignment [65.268245109828]
We examine algorithms for conducting credit assignment in artificial neural networks that are inspired or motivated by neurobiology.
We organize the ever-growing set of brain-inspired learning schemes into six general families and consider these in the context of backpropagation of errors.
The results of this review are meant to encourage future developments in neuro-mimetic systems and their constituent learning processes.
arXiv Detail & Related papers (2023-12-01T05:20:57Z) - Causal machine learning for single-cell genomics [94.28105176231739]
We discuss the application of machine learning techniques to single-cell genomics and their challenges.
We first present the model that underlies most of current causal approaches to single-cell biology.
We then identify open problems in the application of causal approaches to single-cell data.
arXiv Detail & Related papers (2023-10-23T13:35:24Z) - Contrastive-Signal-Dependent Plasticity: Self-Supervised Learning in Spiking Neural Circuits [61.94533459151743]
This work addresses the challenge of designing neurobiologically-motivated schemes for adjusting the synapses of spiking networks.
Our experimental simulations demonstrate a consistent advantage over other biologically-plausible approaches when training recurrent spiking networks.
arXiv Detail & Related papers (2023-03-30T02:40:28Z) - Data-driven emergence of convolutional structure in neural networks [83.4920717252233]
We show how fully-connected neural networks solving a discrimination task can learn a convolutional structure directly from their inputs.
By carefully designing data models, we show that the emergence of this pattern is triggered by the non-Gaussian, higher-order local structure of the inputs.
arXiv Detail & Related papers (2022-02-01T17:11:13Z) - Evolving spiking neuron cellular automata and networks to emulate in
vitro neuronal activity [0.0]
We produce spiking neural systems that emulate the patterns of behavior of biological neurons in vitro.
Our models were able to produce a level of network-wide synchrony.
The genomes of the top-performing models indicate the excitability and density of connections in the model play an important role in determining the complexity of the produced activity.
arXiv Detail & Related papers (2021-10-15T17:55:04Z) - Towards an Automatic Analysis of CHO-K1 Suspension Growth in
Microfluidic Single-cell Cultivation [63.94623495501023]
We propose a novel Machine Learning architecture, which allows us to infuse a neural deep network with human-powered abstraction on the level of data.
Specifically, we train a generative model simultaneously on natural and synthetic data, so that it learns a shared representation, from which a target variable, such as the cell count, can be reliably estimated.
arXiv Detail & Related papers (2020-10-20T08:36:51Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.