Brain-HGCN: A Hyperbolic Graph Convolutional Network for Brain Functional Network Analysis
- URL: http://arxiv.org/abs/2509.14965v1
- Date: Thu, 18 Sep 2025 13:55:02 GMT
- Title: Brain-HGCN: A Hyperbolic Graph Convolutional Network for Brain Functional Network Analysis
- Authors: Junhao Jia, Yunyou Liu, Cheng Yang, Yifei Sun, Feiwei Qin, Changmiao Wang, Yong Peng,
- Abstract summary: We propose Brain-HGCN, a geometric deep learning framework based on hyperbolic geometry.<n> Experiments on two large-scale fMRI datasets for psychiatric disorder classification demonstrate that our approach significantly outperforms a wide range of state-of-the-art Euclidean baselines.<n>This work pioneers a new geometric deep learning paradigm for fMRI analysis, highlighting the immense potential of hyperbolic GNNs in the field of computational psychiatry.
- Score: 12.899767824635433
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Functional magnetic resonance imaging (fMRI) provides a powerful non-invasive window into the brain's functional organization by generating complex functional networks, typically modeled as graphs. These brain networks exhibit a hierarchical topology that is crucial for cognitive processing. However, due to inherent spatial constraints, standard Euclidean GNNs struggle to represent these hierarchical structures without high distortion, limiting their clinical performance. To address this limitation, we propose Brain-HGCN, a geometric deep learning framework based on hyperbolic geometry, which leverages the intrinsic property of negatively curved space to model the brain's network hierarchy with high fidelity. Grounded in the Lorentz model, our model employs a novel hyperbolic graph attention layer with a signed aggregation mechanism to distinctly process excitatory and inhibitory connections, ultimately learning robust graph-level representations via a geometrically sound Fr\'echet mean for graph readout. Experiments on two large-scale fMRI datasets for psychiatric disorder classification demonstrate that our approach significantly outperforms a wide range of state-of-the-art Euclidean baselines. This work pioneers a new geometric deep learning paradigm for fMRI analysis, highlighting the immense potential of hyperbolic GNNs in the field of computational psychiatry.
Related papers
- Spectral Graph Neural Networks for Cognitive Task Classification in fMRI Connectomes [0.6372261626436676]
Cognitive task classification using machine learning plays a central role in decoding brain states from neuroimaging data.<n>By integrating machine learning with brain network analysis, complex connectivity patterns can be extracted from functional magnetic resonance imaging connectomes.<n>Our proposed SpectralBrainGNN model, a spectral convolution framework based on graph Fourier transforms (GFT) computed via normalized Laplacian eigendecomposition.<n> Experiments on the Human Connectome Project-Task dataset demonstrate the effectiveness of the proposed approach, achieving a classification accuracy of 96.25%.
arXiv Detail & Related papers (2025-12-31T14:54:06Z) - Moving Beyond Diffusion: Hierarchy-to-Hierarchy Autoregression for fMRI-to-Image Reconstruction [65.67001243986981]
We propose MindHier, a coarse-to-fine fMRI-to-image reconstruction framework built on scale-wise autoregressive modeling.<n>MindHier achieves superior semantic fidelity, 4.67x faster inference, and more deterministic results than the diffusion-based baselines.
arXiv Detail & Related papers (2025-10-25T15:40:07Z) - Hyperbolic Kernel Graph Neural Networks for Neurocognitive Decline Analysis from Multimodal Brain Imaging [22.883290184028738]
This paper presents a hyperbolic kernel graph fusion framework for neurocognitive decline analysis with multimodal neuroimages.<n>It consists of a multimodal graph construction module, a graph representation learning module that encodes brain graphs in hyperbolic space, and a hyperbolic neural network for downstream predictions.
arXiv Detail & Related papers (2025-06-24T13:16:37Z) - Can we ease the Injectivity Bottleneck on Lorentzian Manifolds for Graph Neural Networks? [0.0]
Lorentzian Graph Isomorphic Network (LGIN) is a novel HGNN designed for enhanced discrimination within the Lorentzian model.<n>LGIN is the first to adapt principles of powerful, highly discriminative GNN architectures to a Riemannian manifold.
arXiv Detail & Related papers (2025-03-31T18:49:34Z) - Strongly Topology-preserving GNNs for Brain Graph Super-resolution [5.563171090433323]
Brain graph super-resolution (SR) is an under-explored yet highly relevant task in network neuroscience.
Current SR methods leverage graph neural networks (GNNs) thanks to their ability to handle graph-structured datasets.
We develop an efficient mapping from the edge space of our low-resolution (LR) brain graphs to the node space of a high-resolution (HR) dual graph.
arXiv Detail & Related papers (2024-11-01T03:29:04Z) - Topology-Aware Graph Augmentation for Predicting Clinical Trajectories in Neurocognitive Disorders [27.280927277680515]
We propose a topology-aware graph augmentation (TGA) framework, comprising a pretext model to train a generalizable encoder and a task-specific model to perform downstream tasks.
Experiments on 1, 688 fMRI scans suggest that TGA outperforms several state-of-the-art methods.
arXiv Detail & Related papers (2024-10-31T19:37:20Z) - Spatiotemporal Graph Learning with Direct Volumetric Information Passing and Feature Enhancement [62.91536661584656]
We propose a dual-module framework, Cell-embedded and Feature-enhanced Graph Neural Network (aka, CeFeGNN) for learning.<n>We embed learnable cell attributions to the common node-edge message passing process, which better captures the spatial dependency of regional features.<n>Experiments on various PDE systems and one real-world dataset demonstrate that CeFeGNN achieves superior performance compared with other baselines.
arXiv Detail & Related papers (2024-09-26T16:22:08Z) - Graph Neural Networks for Brain Graph Learning: A Survey [53.74244221027981]
Graph neural networks (GNNs) have demonstrated a significant advantage in mining graph-structured data.
GNNs to learn brain graph representations for brain disorder analysis has recently gained increasing attention.
In this paper, we aim to bridge this gap by reviewing brain graph learning works that utilize GNNs.
arXiv Detail & Related papers (2024-06-01T02:47:39Z) - Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation [56.34634121544929]
In this study, we first construct the brain-effective network via the dynamic causal model.
We then introduce an interpretable graph learning framework termed Spatio-Temporal Embedding ODE (STE-ODE)
This framework incorporates specifically designed directed node embedding layers, aiming at capturing the dynamic interplay between structural and effective networks.
arXiv Detail & Related papers (2024-05-21T20:37:07Z) - Brain Networks and Intelligence: A Graph Neural Network Based Approach to Resting State fMRI Data [2.193937336601403]
We present a novel modeling architecture called BrainRGIN for predicting intelligence (fluid, crystallized, and total intelligence) using graph neural networks on rsfMRI derived connectivity matrices.
Our approach incorporates a clustering-based embedding and graph isomorphism network in the graph convolutional layer to reflect the nature of the brain sub-network organization.
arXiv Detail & Related papers (2023-11-06T20:58:07Z) - DBGDGM: Dynamic Brain Graph Deep Generative Model [63.23390833353625]
Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data.
It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction.
Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs.
We propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings.
arXiv Detail & Related papers (2023-01-26T20:45:30Z) - DynDepNet: Learning Time-Varying Dependency Structures from fMRI Data
via Dynamic Graph Structure Learning [58.94034282469377]
We propose DynDepNet, a novel method for learning the optimal time-varying dependency structure of fMRI data induced by downstream prediction tasks.
Experiments on real-world fMRI datasets, for the task of sex classification, demonstrate that DynDepNet achieves state-of-the-art results.
arXiv Detail & Related papers (2022-09-27T16:32:11Z) - Functional2Structural: Cross-Modality Brain Networks Representation
Learning [55.24969686433101]
Graph mining on brain networks may facilitate the discovery of novel biomarkers for clinical phenotypes and neurodegenerative diseases.
We propose a novel graph learning framework, known as Deep Signed Brain Networks (DSBN), with a signed graph encoder.
We validate our framework on clinical phenotype and neurodegenerative disease prediction tasks using two independent, publicly available datasets.
arXiv Detail & Related papers (2022-05-06T03:45:36Z) - Hyperbolic Neural Networks++ [66.16106727715061]
We generalize the fundamental components of neural networks in a single hyperbolic geometry model, namely, the Poincar'e ball model.
Experiments show the superior parameter efficiency of our methods compared to conventional hyperbolic components, and stability and outperformance over their Euclidean counterparts.
arXiv Detail & Related papers (2020-06-15T08:23:20Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.