DART: A Structured Dataset of Regulatory Drug Documents in Italian for Clinical NLP
- URL: http://arxiv.org/abs/2510.18475v1
- Date: Tue, 21 Oct 2025 09:53:17 GMT
- Title: DART: A Structured Dataset of Regulatory Drug Documents in Italian for Clinical NLP
- Authors: Mariano Barone, Antonio Laudante, Giuseppe Riccio, Antonio Romano, Marco Postiglione, Vincenzo Moscato,
- Abstract summary: DART is a structured corpus of Italian summaries of product characteristics from the Italian Medicines Agency (AIFA)<n>It provides structured information on key pharmacological domains such as indications, adverse drug reactions, and drug-drug interactions.<n>To validate its utility, we implemented an LLM-based drug interaction checker that leverages the dataset to infer clinically meaningful interactions.
- Score: 10.905164788230913
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: The extraction of pharmacological knowledge from regulatory documents has become a key focus in biomedical natural language processing, with applications ranging from adverse event monitoring to AI-assisted clinical decision support. However, research in this field has predominantly relied on English-language corpora such as DrugBank, leaving a significant gap in resources tailored to other healthcare systems. To address this limitation, we introduce DART (Drug Annotation from Regulatory Texts), the first structured corpus of Italian Summaries of Product Characteristics derived from the official repository of the Italian Medicines Agency (AIFA). The dataset was built through a reproducible pipeline encompassing web-scale document retrieval, semantic segmentation of regulatory sections, and clinical summarization using a few-shot-tuned large language model with low-temperature decoding. DART provides structured information on key pharmacological domains such as indications, adverse drug reactions, and drug-drug interactions. To validate its utility, we implemented an LLM-based drug interaction checker that leverages the dataset to infer clinically meaningful interactions. Experimental results show that instruction-tuned LLMs can accurately infer potential interactions and their clinical implications when grounded in the structured textual fields of DART. We publicly release our code on GitHub: https://github.com/PRAISELab-PicusLab/DART.
Related papers
- Empowering Healthcare Practitioners with Language Models: Structuring Speech Transcripts in Two Real-World Clinical Applications [5.91866991540808]
Two high-impact NLP tasks remain underexplored due to data scarcity and sensitivity.<n>Practical solutions to these real-world clinical tasks can significantly reduce the documentation burden on healthcare providers.<n>We release SYNUR and SIMORD, the first open-source datasets for nurse observation extraction and medical order extraction.
arXiv Detail & Related papers (2025-07-07T22:29:29Z) - INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning [6.849511893206566]
We build up an entity linking function to map extracted medical terminologies into the SNOMED-CT codes and the British National Formulary codes.<n>Our model's toolkit and desktop applications are publicly available.
arXiv Detail & Related papers (2024-09-28T22:06:06Z) - ClinLinker: Medical Entity Linking of Clinical Concept Mentions in Spanish [39.81302995670643]
This study presents ClinLinker, a novel approach employing a two-phase pipeline for medical entity linking.
It is based on a SapBERT-based bi-encoder and subsequent re-ranking with a cross-encoder, trained by following a contrastive-learning strategy to be tailored to medical concepts in Spanish.
arXiv Detail & Related papers (2024-04-09T15:04:27Z) - Don't Ignore Dual Logic Ability of LLMs while Privatizing: A
Data-Intensive Analysis in Medical Domain [19.46334739319516]
We study how the dual logic ability of LLMs is affected during the privatization process in the medical domain.
Our results indicate that incorporating general domain dual logic data into LLMs not only enhances LLMs' dual logic ability but also improves their accuracy.
arXiv Detail & Related papers (2023-09-08T08:20:46Z) - Advancing Italian Biomedical Information Extraction with
Transformers-based Models: Methodological Insights and Multicenter Practical
Application [0.27027468002793437]
Information Extraction can help clinical practitioners overcome the limitation by using automated text-mining pipelines.
We created the first Italian neuropsychiatric Named Entity Recognition dataset, PsyNIT, and used it to develop a Transformers-based model.
The lessons learned are: (i) the crucial role of a consistent annotation process and (ii) a fine-tuning strategy that combines classical methods with a "low-resource" approach.
arXiv Detail & Related papers (2023-06-08T16:15:46Z) - Self-Verification Improves Few-Shot Clinical Information Extraction [73.6905567014859]
Large language models (LLMs) have shown the potential to accelerate clinical curation via few-shot in-context learning.
They still struggle with issues regarding accuracy and interpretability, especially in mission-critical domains such as health.
Here, we explore a general mitigation framework using self-verification, which leverages the LLM to provide provenance for its own extraction and check its own outputs.
arXiv Detail & Related papers (2023-05-30T22:05:11Z) - Development and validation of a natural language processing algorithm to
pseudonymize documents in the context of a clinical data warehouse [53.797797404164946]
The study highlights the difficulties faced in sharing tools and resources in this domain.
We annotated a corpus of clinical documents according to 12 types of identifying entities.
We build a hybrid system, merging the results of a deep learning model as well as manual rules.
arXiv Detail & Related papers (2023-03-23T17:17:46Z) - Few-Shot Cross-lingual Transfer for Coarse-grained De-identification of
Code-Mixed Clinical Texts [56.72488923420374]
Pre-trained language models (LMs) have shown great potential for cross-lingual transfer in low-resource settings.
We show the few-shot cross-lingual transfer property of LMs for named recognition (NER) and apply it to solve a low-resource and real-world challenge of code-mixed (Spanish-Catalan) clinical notes de-identification in the stroke.
arXiv Detail & Related papers (2022-04-10T21:46:52Z) - Self-supervised Answer Retrieval on Clinical Notes [68.87777592015402]
We introduce CAPR, a rule-based self-supervision objective for training Transformer language models for domain-specific passage matching.
We apply our objective in four Transformer-based architectures: Contextual Document Vectors, Bi-, Poly- and Cross-encoders.
We report that CAPR outperforms strong baselines in the retrieval of domain-specific passages and effectively generalizes across rule-based and human-labeled passages.
arXiv Detail & Related papers (2021-08-02T10:42:52Z) - Towards Incorporating Entity-specific Knowledge Graph Information in
Predicting Drug-Drug Interactions [1.14219428942199]
We propose a new method, BERTKG-DDI, to combine drug embeddings obtained from its interaction with other biomedical entities along with domain-specific BioBERT embedding-based RC architecture.
Experiments conducted on the DDIExtraction 2013 corpus clearly indicate that this strategy improves other baselines architectures by 4.1% macro F1-score.
arXiv Detail & Related papers (2020-12-21T06:44:32Z) - Text Mining to Identify and Extract Novel Disease Treatments From
Unstructured Datasets [56.38623317907416]
We use Google Cloud to transcribe podcast episodes of an NPR radio show.
We then build a pipeline for systematically pre-processing the text.
Our model successfully identified that Omeprazole can help treat heartburn.
arXiv Detail & Related papers (2020-10-22T19:52:49Z) - Learning Contextualized Document Representations for Healthcare Answer
Retrieval [68.02029435111193]
Contextual Discourse Vectors (CDV) is a distributed document representation for efficient answer retrieval from long documents.
Our model leverages a dual encoder architecture with hierarchical LSTM layers and multi-task training to encode the position of clinical entities and aspects alongside the document discourse.
We show that our generalized model significantly outperforms several state-of-the-art baselines for healthcare passage ranking.
arXiv Detail & Related papers (2020-02-03T15:47:19Z) - Data Mining in Clinical Trial Text: Transformers for Classification and
Question Answering Tasks [2.127049691404299]
This research applies advances in natural language processing to evidence synthesis based on medical texts.
The main focus is on information characterized via the Population, Intervention, Comparator, and Outcome (PICO) framework.
Recent neural network architectures based on transformers show capacities for transfer learning and increased performance on downstream natural language processing tasks.
arXiv Detail & Related papers (2020-01-30T11:45:59Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.