Data-Driven Spectral Prediction for Accelerating Large-Scale Electronic Structure Calculations
- URL: http://arxiv.org/abs/2606.00401v1
- Date: Fri, 29 May 2026 22:35:15 GMT
- Title: Data-Driven Spectral Prediction for Accelerating Large-Scale Electronic Structure Calculations
- Abstract summary: We investigate three machine learning models trained on a novel 2 TB dataset of protein dimers.<n>The predicted spectra provide initial guesses that effectively bypass early Self-Consistent Field iterations in BigDFT.<n>These spectral predictors will be deployed to dynamically optimize upcoming rational filter-based eigensolvers, such as FrASE, which is currently in initial development.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Simulating large molecular systems comprising thousands of atoms requires highly scalable methodologies. While modern Density Functional Theory (DFT) codes exhibit linear scaling, solving the associated large, sparse generalized eigenproblems remains a critical computational bottleneck on exascale architectures. In the context of the LimitX project, we propose a data-driven framework to accelerate these calculations. By shifting the machine learning target from discrete eigenvalues to the coefficients of an interpolating Chebyshev polynomial, and by comparing both all-atom and fragment-based structural representations, we successfully overcome the dimensionality constraints of large-scale spectral prediction. We investigate three machine learning models (Kernel Ridge Regression, Graph Neural Networks, and Random Forests) trained on a novel 2 TB dataset of protein dimers. The predicted spectra provide initial guesses that effectively bypass early Self-Consistent Field (SCF) iterations in BigDFT. Ultimately, these spectral predictors will be deployed to dynamically optimize upcoming rational filter-based eigensolvers, such as FrASE, which is currently in initial development.
Related papers
- Multimodal Molecular Representation Learning with Graph Neural Networks, Deep & Cross Networks, and SMILES Embeddings [2.9593641578445258]
We introduce a parameter-efficient Tri-Branch Modular Fusion Network that synthesizes three modalities: 3D spatial geometry (SchNet), discrete topological grammar (SMILES via ChemBERTa), and explicit macroscopic physicochemical descriptors (Deep & Cross Network)<n> operating with fewer than one million parameters, this architecture decisively surpasses the sub-chemical accuracy threshold and yields a substantial 20.6% reduction over a strictly controlled geometric baseline.
arXiv Detail & Related papers (2026-07-07T01:47:44Z) - MALOQ: Massively Accelerated Learning of Operators for Quantum Transport [71.9141151643915]
MALOQ is an application built to train on and predict electronic-structure matrices for systems made of few to 100k atoms.<n>It reduces time-per-epoch by over 30% compared to a molecule-wise-distributed framework.<n>We demonstrate scalable training and inference for 3,000-12,000 atoms on the Alps supercomputer.
arXiv Detail & Related papers (2026-06-27T13:34:52Z) - Free Decompression with Algebraic Spectral Curves [45.17701640697655]
Free decompression (FD) is a recently proposed method for extrapolating spectral information across matrix sizes.<n>This paper recasts FD as an evolution along spectral curves which can be readily integrated.<n>We demonstrate the efficacy of our framework on models of interest in modern machine learning.
arXiv Detail & Related papers (2026-05-05T11:03:48Z) - Scalable Learning of Multivariate Distributions via Coresets [48.02318786960811]
We develop a novel coreset construction for multivariate conditional transformation models (MCTMs) to enhance their scalability and training efficiency.<n>Our approach yields substantial data reduction via importance sampling.<n>Compared to conventional full-parametric models, where coresets have been incorporated before, our semi-parametric approach exhibits enhanced adaptability.
arXiv Detail & Related papers (2026-03-20T09:28:43Z) - Multi-Dimensional Visual Data Recovery: Scale-Aware Tensor Modeling and Accelerated Randomized Computation [51.65236537605077]
We propose a new type of network compression optimization technique, fully randomized tensor network compression (FCTN)<n>FCTN has significant advantages in correlation characterization and transpositional in algebra, and has notable achievements in multi-dimensional data processing and analysis.<n>We derive efficient algorithms with guarantees to solve the formulated models.
arXiv Detail & Related papers (2026-02-13T14:56:37Z) - Learning to Discover Iterative Spectral Algorithms [46.39331984989963]
AutoSpec is a neural network framework for discovering iterative spectral algorithms for large-scale numerical linear algebra.<n>We apply AutoSpec to discovering algorithms for representative numerical linear algebra tasks.<n>On real-world solvers, the learned procedures deliver orders-of-magnitude improvements in accuracy and/or reductions in count.
arXiv Detail & Related papers (2026-02-10T08:39:59Z) - Beyond Structure: Invariant Crystal Property Prediction with Pseudo-Particle Ray Diffraction [23.89478649565297]
Crystal property prediction is computationally prohibitive to solve exactly for large many-body systems using traditional density functional theory.<n>We introduce PRDNet that leverages unique reciprocal-space diffraction besides graph representations.<n>Extensive experiments are conducted on Materials Project, JARVIS-DFT, and MatBench, demonstrating that the proposed model achieves state-of-the-art performance.
arXiv Detail & Related papers (2025-09-26T02:30:23Z) - Spectra-to-Structure and Structure-to-Spectra Inference Across the Periodic Table [49.65586812435899]
XAStruct is a learning-based system capable of both predicting XAS spectra from crystal structures and inferring local structural descriptors from XAS input.<n>XAStruct is trained on a large-scale dataset spanning over 70 elements across the periodic table.
arXiv Detail & Related papers (2025-06-13T15:58:05Z) - TokenUnify: Scaling Up Autoregressive Pretraining for Neuron Segmentation [65.65530016765615]
We propose a hierarchical predictive coding framework that captures multi-scale dependencies through three complementary learning objectives.<n> TokenUnify integrates random token prediction, next-token prediction, and next-all token prediction to create a comprehensive representational space.<n>We also introduce a large-scale EM dataset with 1.2 billion annotated voxels, offering ideal long-sequence visual data with spatial continuity.
arXiv Detail & Related papers (2024-05-27T05:45:51Z) - Scaling and renormalization in high-dimensional regression [72.59731158970894]
We present a unifying perspective on recent results on ridge regression.<n>We use the basic tools of random matrix theory and free probability, aimed at readers with backgrounds in physics and deep learning.<n>Our results extend and provide a unifying perspective on earlier models of scaling laws.
arXiv Detail & Related papers (2024-05-01T15:59:00Z) - Probabilistic Unrolling: Scalable, Inverse-Free Maximum Likelihood
Estimation for Latent Gaussian Models [69.22568644711113]
We introduce probabilistic unrolling, a method that combines Monte Carlo sampling with iterative linear solvers to circumvent matrix inversions.
Our theoretical analyses reveal that unrolling and backpropagation through the iterations of the solver can accelerate gradient estimation for maximum likelihood estimation.
In experiments on simulated and real data, we demonstrate that probabilistic unrolling learns latent Gaussian models up to an order of magnitude faster than gradient EM, with minimal losses in model performance.
arXiv Detail & Related papers (2023-06-05T21:08:34Z) - Temporal Subsampling Diminishes Small Spatial Scales in Recurrent Neural
Network Emulators of Geophysical Turbulence [0.0]
We investigate how an often overlooked processing step affects the quality of an emulator's predictions.
We implement ML architectures from a class of methods called reservoir computing: (1) a form of spatial Vector Autoregression (N VAR), and (2) an Echo State Network (ESN)
In all cases, subsampling the training data consistently leads to an increased bias at small scales that resembles numerical diffusion.
arXiv Detail & Related papers (2023-04-28T21:34:53Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.