Analysis Of Multi Field Of View Cnn And Attention Cnn On H&E Stained
Whole-slide Images On Hepatocellular Carcinoma
- URL: http://arxiv.org/abs/2002.04836v2
- Date: Tue, 18 Feb 2020 23:25:48 GMT
- Title: Analysis Of Multi Field Of View Cnn And Attention Cnn On H&E Stained
Whole-slide Images On Hepatocellular Carcinoma
- Authors: Mehmet Burak Say{\i}c{\i}, Rikiya Yamashita, Jeanne Shen
- Abstract summary: Whole-slide images are used for assigning Convolutional Neural Networks for classification and segmentation.
The effect of tile size on performance for classification problem is analysed.
It is found that employing more than one tile size significantly increases the performance of the classification by 3.97%.
- Score: 1.7188280334580195
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Hepatocellular carcinoma (HCC) is a leading cause of cancer-related death
worldwide. Whole-slide imaging which is a method of scanning glass slides have
been employed for diagnosis of HCC. Using high resolution Whole-slide images is
infeasible for Convolutional Neural Network applications. Hence tiling the
Whole-slide images is a common methodology for assigning Convolutional Neural
Networks for classification and segmentation. Determination of the tile size
affects the performance of the algorithms since small field of view can not
capture the information on a larger scale and large field of view can not
capture the information on a cellular scale. In this work, the effect of tile
size on performance for classification problem is analysed. In addition, Multi
Field of View CNN is assigned for taking advantage of the information provided
by different tile sizes and Attention CNN is assigned for giving the capability
of voting most contributing tile size. It is found that employing more than one
tile size significantly increases the performance of the classification by
3.97% and both algorithms are found successful over the algorithm which uses
only one tile size.
Related papers
- Scale-aware Super-resolution Network with Dual Affinity Learning for
Lesion Segmentation from Medical Images [50.76668288066681]
We present a scale-aware super-resolution network to adaptively segment lesions of various sizes from low-resolution medical images.
Our proposed network achieved consistent improvements compared to other state-of-the-art methods.
arXiv Detail & Related papers (2023-05-30T14:25:55Z) - Active Learning Enhances Classification of Histopathology Whole Slide
Images with Attention-based Multiple Instance Learning [48.02011627390706]
We train an attention-based MIL and calculate a confidence metric for every image in the dataset to select the most uncertain WSIs for expert annotation.
With a novel attention guiding loss, this leads to an accuracy boost of the trained models with few regions annotated for each class.
It may in the future serve as an important contribution to train MIL models in the clinically relevant context of cancer classification in histopathology.
arXiv Detail & Related papers (2023-03-02T15:18:58Z) - CEC-CNN: A Consecutive Expansion-Contraction Convolutional Network for
Very Small Resolution Medical Image Classification [0.8108972030676009]
We introduce a new CNN architecture which preserves multi-scale features from deep, intermediate, and shallow layers.
Using a dataset of very low resolution patches from Pancreatic Ductal Adenocarcinoma (PDAC) CT scans we demonstrate that our network can outperform current state of the art models.
arXiv Detail & Related papers (2022-09-27T20:01:12Z) - Preservation of High Frequency Content for Deep Learning-Based Medical
Image Classification [74.84221280249876]
An efficient analysis of large amounts of chest radiographs can aid physicians and radiologists.
We propose a novel Discrete Wavelet Transform (DWT)-based method for the efficient identification and encoding of visual information.
arXiv Detail & Related papers (2022-05-08T15:29:54Z) - Two-Stream Graph Convolutional Network for Intra-oral Scanner Image
Segmentation [133.02190910009384]
We propose a two-stream graph convolutional network (i.e., TSGCN) to handle inter-view confusion between different raw attributes.
Our TSGCN significantly outperforms state-of-the-art methods in 3D tooth (surface) segmentation.
arXiv Detail & Related papers (2022-04-19T10:41:09Z) - Multi-Scale Input Strategies for Medulloblastoma Tumor Classification
using Deep Transfer Learning [59.30734371401316]
Medulloblastoma is the most common malignant brain cancer among children.
CNN has shown promising results for MB subtype classification.
We study the impact of tile size and input strategy.
arXiv Detail & Related papers (2021-09-14T09:42:37Z) - Gigapixel Histopathological Image Analysis using Attention-based Neural
Networks [7.1715252990097325]
We propose a CNN structure consisting of a compressing path and a learning path.
Our method integrates both global and local information, is flexible with regard to the size of the input images and only requires weak image-level labels.
arXiv Detail & Related papers (2021-01-25T10:18:52Z) - Weakly-supervised Learning For Catheter Segmentation in 3D Frustum
Ultrasound [74.22397862400177]
We propose a novel Frustum ultrasound based catheter segmentation method.
The proposed method achieved the state-of-the-art performance with an efficiency of 0.25 second per volume.
arXiv Detail & Related papers (2020-10-19T13:56:22Z) - Boosted EfficientNet: Detection of Lymph Node Metastases in Breast
Cancer Using Convolutional Neural Network [6.444922476853511]
The Convolutional Neutral Network (CNN) has been adapted to predict and classify lymph node metastasis in breast cancer.
We propose a novel data augmentation method named Random Center Cropping (RCC) to facilitate small resolution images.
arXiv Detail & Related papers (2020-10-10T15:18:56Z) - Multiscale Detection of Cancerous Tissue in High Resolution Slide Scans [0.0]
We present an algorithm for multi-scale tumor (chimeric cell) detection in high resolution slide scans.
Our approach modifies the effective receptive field at different layers in a CNN so that objects with a broad range of varying scales can be detected in a single forward pass.
arXiv Detail & Related papers (2020-10-01T18:56:46Z) - Resource-Frugal Classification and Analysis of Pathology Slides Using
Image Entropy [0.0]
Histopathology slides of lung malignancies are classified using resource-frugal convolution neural networks (CNNs)
A lightweight CNN produces tile-level classifications that are aggregated to classify the slide.
color-coded probability maps are created by overlapping tiles and averaging the tile-level probabilities at a pixel level.
arXiv Detail & Related papers (2020-02-16T18:42:36Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.