Structure Preserving Stain Normalization of Histopathology Images Using
Self-Supervised Semantic Guidance
- URL: http://arxiv.org/abs/2008.02101v3
- Date: Thu, 3 Jun 2021 15:35:06 GMT
- Title: Structure Preserving Stain Normalization of Histopathology Images Using
Self-Supervised Semantic Guidance
- Authors: Dwarikanath Mahapatra, Behzad Bozorgtabar, Jean-Philippe Thiran, Ling
Shao
- Abstract summary: We propose a self-supervised approach to incorporate semantic guidance into a GAN based stain normalization framework.
Our method does not require manual segmentation maps which is a significant advantage over existing methods.
- Score: 84.7571086566595
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Although generative adversarial network (GAN) based style transfer is state
of the art in histopathology color-stain normalization, they do not explicitly
integrate structural information of tissues. We propose a self-supervised
approach to incorporate semantic guidance into a GAN based stain normalization
framework and preserve detailed structural information. Our method does not
require manual segmentation maps which is a significant advantage over existing
methods. We integrate semantic information at different layers between a
pre-trained semantic network and the stain color normalization network. The
proposed scheme outperforms other color normalization methods leading to better
classification and segmentation performance.
Related papers
- Revisiting Adaptive Cellular Recognition Under Domain Shifts: A Contextual Correspondence View [49.03501451546763]
We identify the importance of implicit correspondences across biological contexts for exploiting domain-invariant pathological composition.
We propose self-adaptive dynamic distillation to secure instance-aware trade-offs across different model constituents.
arXiv Detail & Related papers (2024-07-14T04:41:16Z) - Structured Gradient-based Interpretations via Norm-Regularized Adversarial Training [18.876749156797935]
gradient-based saliency maps often lack desired structures such as sparsity and connectedness in their application to real-world computer vision models.
A frequently used approach to inducing sparsity structures into gradient-based saliency maps is to alter the simple gradient scheme using sparsification or norm-based regularization.
In this work, we propose to apply adversarial training as an in-processing scheme to train neural networks with structured simple gradient maps.
arXiv Detail & Related papers (2024-04-06T14:49:36Z) - ConDiSR: Contrastive Disentanglement and Style Regularization for Single Domain Generalization [42.810247034149214]
Medical data often exhibits distribution shifts, which cause test-time performance degradation for deep learning models trained using standard pipelines.
This study highlights the importance and challenges of exploring Single Domain Generalization frameworks in the context of the classification task.
arXiv Detail & Related papers (2024-03-14T13:50:44Z) - RRWNet: Recursive Refinement Network for Effective Retinal Artery/Vein Segmentation and Classification [0.8386558353546658]
A thorough analysis of the retinal vasculature requires the segmentation of the blood vessels and their classification into arteries and veins.
We introduce RRWNet, a novel end-to-end deep learning framework that addresses this limitation.
In particular, RRWNet is composed of two specializedworks: a Base subnetwork that generates base segmentation maps from the input images, and a Recursive Refinement subnetwork that iteratively improves these maps.
arXiv Detail & Related papers (2024-02-05T16:35:29Z) - Discovering Class-Specific GAN Controls for Semantic Image Synthesis [73.91655061467988]
We propose a novel method for finding spatially disentangled class-specific directions in the latent space of pretrained SIS models.
We show that the latent directions found by our method can effectively control the local appearance of semantic classes.
arXiv Detail & Related papers (2022-12-02T21:39:26Z) - Unsupervised Domain Adaptation for Semantic Segmentation via Low-level
Edge Information Transfer [27.64947077788111]
Unsupervised domain adaptation for semantic segmentation aims to make models trained on synthetic data adapt to real images.
Previous feature-level adversarial learning methods only consider adapting models on the high-level semantic features.
We present the first attempt at explicitly using low-level edge information, which has a small inter-domain gap, to guide the transfer of semantic information.
arXiv Detail & Related papers (2021-09-18T11:51:31Z) - Mixup-CAM: Weakly-supervised Semantic Segmentation via Uncertainty
Regularization [73.03956876752868]
We propose a principled and end-to-end train-able framework to allow the network to pay attention to other parts of the object.
Specifically, we introduce the mixup data augmentation scheme into the classification network and design two uncertainty regularization terms to better interact with the mixup strategy.
arXiv Detail & Related papers (2020-08-03T21:19:08Z) - GCN for HIN via Implicit Utilization of Attention and Meta-paths [104.24467864133942]
Heterogeneous information network (HIN) embedding aims to map the structure and semantic information in a HIN to distributed representations.
We propose a novel neural network method via implicitly utilizing attention and meta-paths.
We first use the multi-layer graph convolutional network (GCN) framework, which performs a discriminative aggregation at each layer.
We then give an effective relaxation and improvement via introducing a new propagation operation which can be separated from aggregation.
arXiv Detail & Related papers (2020-07-06T11:09:40Z) - Progressive Graph Convolutional Networks for Semi-Supervised Node
Classification [97.14064057840089]
Graph convolutional networks have been successful in addressing graph-based tasks such as semi-supervised node classification.
We propose a method to automatically build compact and task-specific graph convolutional networks.
arXiv Detail & Related papers (2020-03-27T08:32:16Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.