SDF-Bayes: Cautious Optimism in Safe Dose-Finding Clinical Trials with
Drug Combinations and Heterogeneous Patient Groups
- URL: http://arxiv.org/abs/2101.10998v1
- Date: Tue, 26 Jan 2021 18:59:26 GMT
- Title: SDF-Bayes: Cautious Optimism in Safe Dose-Finding Clinical Trials with
Drug Combinations and Heterogeneous Patient Groups
- Authors: Hyun-Suk Lee, Cong Shen, William Zame, Jang-Won Lee, Mihaela van der
Schaar
- Abstract summary: This paper proposes a novel Bayesian design, SDF-Bayes, for finding the maximum tolerated dose (MTD) of a drug in a clinical trial.
Rather than the conventional principle of escalating or de-escalating the current dose of one drug, SDF-Bayes proceeds by cautious optimism.
Extensive experiments based on both synthetic and real-world datasets demonstrate the advantages of SDF-Bayes over state of the art DC trial designs.
- Score: 84.63561578944183
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Phase I clinical trials are designed to test the safety (non-toxicity) of
drugs and find the maximum tolerated dose (MTD). This task becomes
significantly more challenging when multiple-drug dose-combinations (DC) are
involved, due to the inherent conflict between the exponentially increasing DC
candidates and the limited patient budget. This paper proposes a novel Bayesian
design, SDF-Bayes, for finding the MTD for drug combinations in the presence of
safety constraints. Rather than the conventional principle of escalating or
de-escalating the current dose of one drug (perhaps alternating between drugs),
SDF-Bayes proceeds by cautious optimism: it chooses the next DC that, on the
basis of current information, is most likely to be the MTD (optimism), subject
to the constraint that it only chooses DCs that have a high probability of
being safe (caution). We also propose an extension, SDF-Bayes-AR, that accounts
for patient heterogeneity and enables heterogeneous patient recruitment.
Extensive experiments based on both synthetic and real-world datasets
demonstrate the advantages of SDF-Bayes over state of the art DC trial designs
in terms of accuracy and safety.
Related papers
- Devil in the Tail: A Multi-Modal Framework for Drug-Drug Interaction Prediction in Long Tail Distinction [12.430490805111921]
Drug-drug interaction (DDI) identification is a crucial aspect of pharmacology research.
In this paper, a novel multi-modal deep learning-based framework, namely TFDM, is introduced to leverage multiple properties of a drug to achieve DDI classification.
To tackle the challenge posed by the distribution skewness across categories, a novel loss function called Tailed Focal Loss is introduced.
arXiv Detail & Related papers (2024-10-16T05:21:22Z) - Design and Evaluation of a CDSS for Drug Allergy Management Using LLMs and Pharmaceutical Data Integration [3.2627279988912194]
Heliot is an innovative CDSS for drug allergy management.
It integrates Large Language Models (LLMs) with a comprehensive pharmaceutical data repository.
Heliot's high accuracy, precision, recall, and F1 score, uniformly reaching 100% across multiple experimental runs.
arXiv Detail & Related papers (2024-09-24T18:55:10Z) - Zero-shot Learning of Drug Response Prediction for Preclinical Drug
Screening [38.94493676651818]
We propose a zero-shot learning solution for the.
task in preclinical drug screening.
Specifically, we propose a Multi-branch Multi-Source Domain Adaptation Test Enhancement Plug-in, called MSDA.
arXiv Detail & Related papers (2023-10-05T05:55:41Z) - SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity
Prediction [127.43571146741984]
Drug-Target Affinity (DTA) is of vital importance in early-stage drug discovery.
wet experiments remain the most reliable method, but they are time-consuming and resource-intensive.
Existing methods have primarily focused on developing techniques based on the available DTA data, without adequately addressing the data scarcity issue.
We present the SSM-DTA framework, which incorporates three simple yet highly effective strategies.
arXiv Detail & Related papers (2022-06-20T14:53:25Z) - Multi-View Substructure Learning for Drug-Drug Interaction Prediction [69.34322811160912]
We propose a novel multi- view drug substructure network for DDI prediction (MSN-DDI)
MSN-DDI learns chemical substructures from both the representations of the single drug (intra-view) and the drug pair (inter-view) simultaneously and utilizes the substructures to update the drug representation iteratively.
Comprehensive evaluations demonstrate that MSN-DDI has almost solved DDI prediction for existing drugs by achieving a relatively improved accuracy of 19.32% and an over 99% accuracy under the transductive setting.
arXiv Detail & Related papers (2022-03-28T05:44:29Z) - SafeDrug: Dual Molecular Graph Encoders for Safe Drug Recommendations [59.590084937600764]
We propose a DDI-controllable drug recommendation model named SafeDrug to leverage drugs' molecule structures and model DDIs explicitly.
On a benchmark dataset, our SafeDrug is relatively shown to reduce DDI by 19.43% and improves 2.88% on Jaccard similarity between recommended and actually prescribed drug combinations over previous approaches.
arXiv Detail & Related papers (2021-05-05T00:20:48Z) - DTI-SNNFRA: Drug-Target interaction prediction by shared nearest
neighbors and fuzzy-rough approximation [0.0]
We have proposed DTI-SNNFRA, a framework for predicting drug-target interaction (DTI) based on shared nearest neighbour (SNN) and fuzzy-rough approximation (FRA)
The model performs exceptionally well with a high prediction score of 0.95 for ROC-AUC.
arXiv Detail & Related papers (2020-09-22T19:10:10Z) - Learning for Dose Allocation in Adaptive Clinical Trials with Safety
Constraints [84.09488581365484]
Phase I dose-finding trials are increasingly challenging as the relationship between efficacy and toxicity of new compounds becomes more complex.
Most commonly used methods in practice focus on identifying a Maximum Tolerated Dose (MTD) by learning only from toxicity events.
We present a novel adaptive clinical trial methodology that aims at maximizing the cumulative efficacies while satisfying the toxicity safety constraint with high probability.
arXiv Detail & Related papers (2020-06-09T03:06:45Z) - Contextual Constrained Learning for Dose-Finding Clinical Trials [102.8283665750281]
C3T-Budget is a contextual constrained clinical trial algorithm for dose-finding under both budget and safety constraints.
It recruits patients with consideration of the remaining budget, the remaining time, and the characteristics of each group.
arXiv Detail & Related papers (2020-01-08T11:46:48Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.