DiaKG: an Annotated Diabetes Dataset for Medical Knowledge Graph
Construction
- URL: http://arxiv.org/abs/2105.15033v1
- Date: Mon, 31 May 2021 15:12:49 GMT
- Title: DiaKG: an Annotated Diabetes Dataset for Medical Knowledge Graph
Construction
- Authors: Dejie Chang, Mosha Chen, Chaozhen Liu, Liping Liu, Dongdong Li, Wei
Li, Fei Kong, Bangchang Liu, Xiaobin Luo, Ji Qi, Qiao Jin, Bin Xu
- Abstract summary: We introduce DiaKG, a high-quality Chinese dataset for Diabetes knowledge graph.
This dataset contains 22,050 entities and 6,890 relations in total.
We hope the release of this dataset can assist the construction of diabetes knowledge graphs and facilitate AI-based applications.
- Score: 13.348103601393397
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Knowledge Graph has been proven effective in modeling structured information
and conceptual knowledge, especially in the medical domain. However, the lack
of high-quality annotated corpora remains a crucial problem for advancing the
research and applications on this task. In order to accelerate the research for
domain-specific knowledge graphs in the medical domain, we introduce DiaKG, a
high-quality Chinese dataset for Diabetes knowledge graph, which contains
22,050 entities and 6,890 relations in total. We implement recent typical
methods for Named Entity Recognition and Relation Extraction as a benchmark to
evaluate the proposed dataset thoroughly. Empirical results show that the DiaKG
is challenging for most existing methods and further analysis is conducted to
discuss future research direction for improvements. We hope the release of this
dataset can assist the construction of diabetes knowledge graphs and facilitate
AI-based applications.
Related papers
- The Role of Graph Topology in the Performance of Biomedical Knowledge Graph Completion Models [3.1666540219908272]
We conduct a comprehensive investigation into the properties of publicly available biomedical Knowledge Graphs.
We establish links to the accuracy observed in real-world applications.
We release all model predictions and a new suite of analysis tools.
arXiv Detail & Related papers (2024-09-06T08:09:15Z) - A Survey of Artificial Intelligence in Gait-Based Neurodegenerative Disease Diagnosis [51.07114445705692]
neurodegenerative diseases (NDs) traditionally require extensive healthcare resources and human effort for medical diagnosis and monitoring.
As a crucial disease-related motor symptom, human gait can be exploited to characterize different NDs.
The current advances in artificial intelligence (AI) models enable automatic gait analysis for NDs identification and classification.
arXiv Detail & Related papers (2024-05-21T06:44:40Z) - A Review on Knowledge Graphs for Healthcare: Resources, Applications, and Promises [52.31710895034573]
This work provides the first comprehensive review of healthcare knowledge graphs (HKGs)
It summarizes the pipeline and key techniques for HKG construction, as well as the common utilization approaches.
At the application level, we delve into the successful integration of HKGs across various health domains.
arXiv Detail & Related papers (2023-06-07T21:51:56Z) - Deep Reinforcement Learning Framework for Thoracic Diseases
Classification via Prior Knowledge Guidance [49.87607548975686]
The scarcity of labeled data for related diseases poses a huge challenge to an accurate diagnosis.
We propose a novel deep reinforcement learning framework, which introduces prior knowledge to direct the learning of diagnostic agents.
Our approach's performance was demonstrated using the well-known NIHX-ray 14 and CheXpert datasets.
arXiv Detail & Related papers (2023-06-02T01:46:31Z) - Dynamic Graph Enhanced Contrastive Learning for Chest X-ray Report
Generation [92.73584302508907]
We propose a knowledge graph with Dynamic structure and nodes to facilitate medical report generation with Contrastive Learning.
In detail, the fundamental structure of our graph is pre-constructed from general knowledge.
Each image feature is integrated with its very own updated graph before being fed into the decoder module for report generation.
arXiv Detail & Related papers (2023-03-18T03:53:43Z) - Knowledge-augmented Graph Machine Learning for Drug Discovery: A Survey [6.288056740658763]
Graph Machine Learning (GML) has gained considerable attention for its exceptional ability to model graph-structured biomedical data.
Recent studies have proposed integrating external biomedical knowledge into the GML pipeline to realise more precise and interpretable drug discovery.
arXiv Detail & Related papers (2023-02-16T12:38:01Z) - Healthcare Knowledge Graph Construction: State-of-the-art, open issues,
and opportunities [5.652978777706895]
This paper is the first to provide a comprehensive taxonomy and a bird's eye view of healthcare KG construction.
A thorough examination of the current state-of-the-art techniques drawn from academic works relevant to various healthcare contexts is carried out.
Several research findings and existing issues in the literature are reported and discussed.
arXiv Detail & Related papers (2022-07-08T09:19:01Z) - Modeling electronic health record data using a knowledge-graph-embedded
topic model [6.170782354287972]
We present KG-ETM, an end-to-end knowledge graph-based multimodal embedded topic model.
KG-ETM distills latent disease topics from EHR data by learning the embedding from the medical knowledge graphs.
Our model is also able to discover interpretable and accurate patient representations for patient stratification and drug recommendations.
arXiv Detail & Related papers (2022-06-03T07:58:17Z) - Scientific Language Models for Biomedical Knowledge Base Completion: An
Empirical Study [62.376800537374024]
We study scientific LMs for KG completion, exploring whether we can tap into their latent knowledge to enhance biomedical link prediction.
We integrate the LM-based models with KG embedding models, using a router method that learns to assign each input example to either type of model and provides a substantial boost in performance.
arXiv Detail & Related papers (2021-06-17T17:55:33Z) - Opportunities and Challenges of Deep Learning Methods for
Electrocardiogram Data: A Systematic Review [62.490310870300746]
The electrocardiogram (ECG) is one of the most commonly used diagnostic tools in medicine and healthcare.
Deep learning methods have achieved promising results on predictive healthcare tasks using ECG signals.
This paper presents a systematic review of deep learning methods for ECG data from both modeling and application perspectives.
arXiv Detail & Related papers (2019-12-28T02:44:29Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.