Hybrid modeling of the human cardiovascular system using NeuralFMUs
- URL: http://arxiv.org/abs/2109.04880v1
- Date: Fri, 10 Sep 2021 13:48:43 GMT
- Title: Hybrid modeling of the human cardiovascular system using NeuralFMUs
- Authors: Tobias Thummerer, Johannes Tintenherr, Lars Mikelsons
- Abstract summary: We show that the hybrid modeling process is more comfortable, needs less system knowledge and is less error-prone compared to modeling solely based on first principle.
The resulting hybrid model has improved in computation performance, compared to a pure first principle white-box model.
The considered use-case can serve as example for other modeling and simulation applications in and beyond the medical domain.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Hybrid modeling, the combination of first principle and machine learning
models, is an emerging research field that gathers more and more attention.
Even if hybrid models produce formidable results for academic examples, there
are still different technical challenges that hinder the use of hybrid modeling
in real-world applications. By presenting NeuralFMUs, the fusion of a FMU, a
numerical ODE solver and an ANN, we are paving the way for the use of a variety
of first principle models from different modeling tools as parts of hybrid
models. This contribution handles the hybrid modeling of a complex, real-world
example: Starting with a simplified 1D-fluid model of the human cardiovascular
system (arterial side), the aim is to learn neglected physical effects like
arterial elasticity from data. We will show that the hybrid modeling process is
more comfortable, needs less system knowledge and is therefore less error-prone
compared to modeling solely based on first principle. Further, the resulting
hybrid model has improved in computation performance, compared to a pure first
principle white-box model, while still fulfilling the requirements regarding
accuracy of the considered hemodynamic quantities. The use of the presented
techniques is explained in a general manner and the considered use-case can
serve as example for other modeling and simulation applications in and beyond
the medical domain.
Related papers
- EMR-Merging: Tuning-Free High-Performance Model Merging [55.03509900949149]
We show that Elect, Mask & Rescale-Merging (EMR-Merging) shows outstanding performance compared to existing merging methods.
EMR-Merging is tuning-free, thus requiring no data availability or any additional training while showing impressive performance.
arXiv Detail & Related papers (2024-05-23T05:25:45Z) - HyPer-EP: Meta-Learning Hybrid Personalized Models for Cardiac Electrophysiology [7.230055455268642]
We present a novel hybrid modeling framework to describe a personalized cardiac digital twin.
We then present a novel meta-learning framework to enable the separate identification of both the physics-based and neural components.
arXiv Detail & Related papers (2024-03-15T02:30:00Z) - Hybrid$^2$ Neural ODE Causal Modeling and an Application to Glycemic Response [5.754225700181611]
We show how to achieve a win-win, state-of-the-art predictive performance emphand causal validity.
We demonstrate our ability to achieve a win-win, state-of-the-art predictive performance emphand causal validity in the challenging task of modeling glucose dynamics post-exercise in individuals with type 1 diabetes.
arXiv Detail & Related papers (2024-02-27T06:01:56Z) - A Multi-Grained Symmetric Differential Equation Model for Learning
Protein-Ligand Binding Dynamics [74.93549765488103]
In drug discovery, molecular dynamics simulation provides a powerful tool for predicting binding affinities, estimating transport properties, and exploring pocket sites.
We propose NeuralMD, the first machine learning surrogate that can facilitate numerical MD and provide accurate simulations in protein-ligand binding.
We show the efficiency and effectiveness of NeuralMD, with a 2000$times$ speedup over standard numerical MD simulation and outperforming all other ML approaches by up to 80% under the stability metric.
arXiv Detail & Related papers (2024-01-26T09:35:17Z) - Knowledge-Guided Additive Modeling For Supervised Regression [6.600299648478795]
We focus on hybrid methods that additively combine a parametric physical term with a machine learning term and investigate model-agnostic training procedures.
Experiments are carried out with different types of machine learning models, including tree-based models and artificial neural networks.
arXiv Detail & Related papers (2023-07-05T12:13:56Z) - Your Autoregressive Generative Model Can be Better If You Treat It as an
Energy-Based One [83.5162421521224]
We propose a unique method termed E-ARM for training autoregressive generative models.
E-ARM takes advantage of a well-designed energy-based learning objective.
We show that E-ARM can be trained efficiently and is capable of alleviating the exposure bias problem.
arXiv Detail & Related papers (2022-06-26T10:58:41Z) - KNODE-MPC: A Knowledge-based Data-driven Predictive Control Framework
for Aerial Robots [5.897728689802829]
We make use of a deep learning tool, knowledge-based neural ordinary differential equations (KNODE), to augment a model obtained from first principles.
The resulting hybrid model encompasses both a nominal first-principle model and a neural network learnt from simulated or real-world experimental data.
To improve closed-loop performance, the hybrid model is integrated into a novel MPC framework, known as KNODE-MPC.
arXiv Detail & Related papers (2021-09-10T12:09:18Z) - A multi-stage machine learning model on diagnosis of esophageal
manometry [50.591267188664666]
The framework includes deep-learning models at the swallow-level stage and feature-based machine learning models at the study-level stage.
This is the first artificial-intelligence-style model to automatically predict CC diagnosis of HRM study from raw multi-swallow data.
arXiv Detail & Related papers (2021-06-25T20:09:23Z) - Improving the Reconstruction of Disentangled Representation Learners via Multi-Stage Modeling [54.94763543386523]
Current autoencoder-based disentangled representation learning methods achieve disentanglement by penalizing the ( aggregate) posterior to encourage statistical independence of the latent factors.
We present a novel multi-stage modeling approach where the disentangled factors are first learned using a penalty-based disentangled representation learning method.
Then, the low-quality reconstruction is improved with another deep generative model that is trained to model the missing correlated latent variables.
arXiv Detail & Related papers (2020-10-25T18:51:15Z) - Hybrid modeling: Applications in real-time diagnosis [64.5040763067757]
We outline a novel hybrid modeling approach that combines machine learning inspired models and physics-based models.
We are using such models for real-time diagnosis applications.
arXiv Detail & Related papers (2020-03-04T00:44:57Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.