Deep Spatio-temporal Sparse Decomposition for Trend Prediction and
Anomaly Detection in Cardiac Electrical Conduction
- URL: http://arxiv.org/abs/2109.09317v1
- Date: Mon, 20 Sep 2021 06:38:50 GMT
- Title: Deep Spatio-temporal Sparse Decomposition for Trend Prediction and
Anomaly Detection in Cardiac Electrical Conduction
- Authors: Xinyu Zhao, Hao Yan, Zhiyong Hu, Dongping Du
- Abstract summary: We propose a deep-temporal decomposition (DSTSD) approach to bypass the time-consuming cardiac partial differential equations.
This approach is validated from the data set generated from the Courtemanche-amirez-Nattel neuron (CRN) model.
- Score: 11.076265159072229
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Electrical conduction among cardiac tissue is commonly modeled with partial
differential equations, i.e., reaction-diffusion equation, where the reaction
term describes cellular stimulation and diffusion term describes electrical
propagation. Detecting and identifying of cardiac cells that produce abnormal
electrical impulses in such nonlinear dynamic systems are important for
efficient treatment and planning. To model the nonlinear dynamics, simulation
has been widely used in both cardiac research and clinical study to investigate
cardiac disease mechanisms and develop new treatment designs. However, existing
cardiac models have a great level of complexity, and the simulation is often
time-consuming. We propose a deep spatio-temporal sparse decomposition (DSTSD)
approach to bypass the time-consuming cardiac partial differential equations
with the deep spatio-temporal model and detect the time and location of the
anomaly (i.e., malfunctioning cardiac cells). This approach is validated from
the data set generated from the Courtemanche-Ramirez-Nattel (CRN) model, which
is widely used to model the propagation of the transmembrane potential across
the cross neuron membrane. The proposed DSTSD achieved the best accuracy in
terms of spatio-temporal mean trend prediction and anomaly detection.
Related papers
- Deep vectorised operators for pulsatile hemodynamics estimation in coronary arteries from a steady-state prior [2.3971720731010766]
We propose a time-efficient surrogate model, powered by machine learning, for the estimation of pulsatile hemodynamics.
We show that our model produces accurate estimates of the pulsatile velocity and pressure while being agnostic to re-sampling of the source domain.
arXiv Detail & Related papers (2024-10-15T12:24:50Z) - Deep State-Space Generative Model For Correlated Time-to-Event Predictions [54.3637600983898]
We propose a deep latent state-space generative model to capture the interactions among different types of correlated clinical events.
Our method also uncovers meaningful insights about the latent correlations among mortality and different types of organ failures.
arXiv Detail & Related papers (2024-07-28T02:42:36Z) - REST: Efficient and Accelerated EEG Seizure Analysis through Residual State Updates [54.96885726053036]
This paper introduces a novel graph-based residual state update mechanism (REST) for real-time EEG signal analysis.
By leveraging a combination of graph neural networks and recurrent structures, REST efficiently captures both non-Euclidean geometry and temporal dependencies within EEG data.
Our model demonstrates high accuracy in both seizure detection and classification tasks.
arXiv Detail & Related papers (2024-06-03T16:30:19Z) - Digital twinning of cardiac electrophysiology models from the surface
ECG: a geodesic backpropagation approach [39.36827689390718]
We introduce a novel method, Geodesic-BP, to solve the inverse eikonal problem.
We show that Geodesic-BP can reconstruct a simulated cardiac activation with high accuracy in a synthetic test case.
Given the future shift towards personalized medicine, Geodesic-BP has the potential to help in future functionalizations of cardiac models.
arXiv Detail & Related papers (2023-08-16T14:57:12Z) - Understanding of Normal and Abnormal Hearts by Phase Space Analysis and
Convolutional Neural Networks [0.0]
His-Purkinje network is used to analyze a normal human heart's power spectra.
CNNs method is applied to 44 records via the MIT-BIH database recorded with MLII.
Binary CNN classification is used to determine healthy or unhealthy hearts.
arXiv Detail & Related papers (2023-05-16T19:52:40Z) - Three-dimensional micro-structurally informed in silico myocardium --
towards virtual imaging trials in cardiac diffusion weighted MRI [58.484353709077034]
We propose a novel method to generate a realistic numerical phantom of myocardial microstructure.
In-silico tissue models enable evaluating quantitative models of magnetic resonance imaging.
arXiv Detail & Related papers (2022-08-22T22:01:44Z) - SurvLatent ODE : A Neural ODE based time-to-event model with competing
risks for longitudinal data improves cancer-associated Deep Vein Thrombosis
(DVT) prediction [68.8204255655161]
We propose a generative time-to-event model, SurvLatent ODE, which parameterizes a latent representation under irregularly sampled data.
Our model then utilizes the latent representation to flexibly estimate survival times for multiple competing events without specifying shapes of event-specific hazard function.
SurvLatent ODE outperforms the current clinical standard Khorana Risk scores for stratifying DVT risk groups.
arXiv Detail & Related papers (2022-04-20T17:28:08Z) - Consistency of mechanistic causal discovery in continuous-time using
Neural ODEs [85.7910042199734]
We consider causal discovery in continuous-time for the study of dynamical systems.
We propose a causal discovery algorithm based on penalized Neural ODEs.
arXiv Detail & Related papers (2021-05-06T08:48:02Z) - Dynamic Mode Decomposition in Adaptive Mesh Refinement and Coarsening
Simulations [58.720142291102135]
Dynamic Mode Decomposition (DMD) is a powerful data-driven method used to extract coherent schemes.
This paper proposes a strategy to enable DMD to extract from observations with different mesh topologies and dimensions.
arXiv Detail & Related papers (2021-04-28T22:14:25Z) - Graph convolutional regression of cardiac depolarization from sparse
endocardial maps [7.3878346797632535]
We propose a novel deep learning method based on graph convolutional neural networks to estimate the depolarization time in the myocardium.
The proposed method, trained on synthetically generated data, may generalize to real data.
arXiv Detail & Related papers (2020-09-28T09:21:14Z) - Deep learning-based reduced order models in cardiac electrophysiology [0.0]
We propose a new, nonlinear approach which exploits deep learning (DL) algorithms to obtain accurate and efficient reduced order models (ROMs)
Our DL approach combines deep feedforward neural networks (NNs) and convolutional autoencoders (AEs)
We show that the proposed DL-ROM framework can efficiently provide solutions to parametrized electrophysiology problems, thus enabling multi-scenario analysis in pathological cases.
arXiv Detail & Related papers (2020-06-02T23:05:03Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.