Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical
Image Segmentation
- URL: http://arxiv.org/abs/2110.08762v1
- Date: Sun, 17 Oct 2021 08:49:33 GMT
- Title: Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical
Image Segmentation
- Authors: Yinghuan Shi, Jian Zhang, Tong Ling, Jiwen Lu, Yefeng Zheng, Qian Yu,
Lei Qi, Yang Gao
- Abstract summary: We present a new semi-supervised segmentation model, namely, conservative-radical network (CoraNet) based on our uncertainty estimation and separate self-training strategy.
Compared with the current state of the art, our CoraNet has demonstrated superior performance.
- Score: 92.9634065964963
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: In semi-supervised medical image segmentation, most previous works draw on
the common assumption that higher entropy means higher uncertainty. In this
paper, we investigate a novel method of estimating uncertainty. We observe
that, when assigned different misclassification costs in a certain degree, if
the segmentation result of a pixel becomes inconsistent, this pixel shows a
relative uncertainty in its segmentation. Therefore, we present a new
semi-supervised segmentation model, namely, conservative-radical network
(CoraNet in short) based on our uncertainty estimation and separate
self-training strategy. In particular, our CoraNet model consists of three
major components: a conservative-radical module (CRM), a certain region
segmentation network (C-SN), and an uncertain region segmentation network
(UC-SN) that could be alternatively trained in an end-to-end manner. We have
extensively evaluated our method on various segmentation tasks with publicly
available benchmark datasets, including CT pancreas, MR endocardium, and MR
multi-structures segmentation on the ACDC dataset. Compared with the current
state of the art, our CoraNet has demonstrated superior performance. In
addition, we have also analyzed its connection with and difference from
conventional methods of uncertainty estimation in semi-supervised medical image
segmentation.
Related papers
- Every Component Counts: Rethinking the Measure of Success for Medical Semantic Segmentation in Multi-Instance Segmentation Tasks [60.80828925396154]
We present Connected-Component(CC)-Metrics, a novel semantic segmentation evaluation protocol.
We motivate this setup in the common medical scenario of semantic segmentation in a full-body PET/CT.
We show how existing semantic segmentation metrics suffer from a bias towards larger connected components.
arXiv Detail & Related papers (2024-10-24T12:26:05Z) - Lung Nodule Segmentation and Uncertain Region Prediction with an
Uncertainty-Aware Attention Mechanism [30.298653876400003]
Radiologists possess diverse training and clinical experiences, leading to variations in the segmentation of lung nodules.
Conventional methods typically select a single annotation as the learning target or attempt to learn a latent space comprising multiple annotations.
We propose an Uncertainty-Aware Attention Mechanism (UAAM) that utilizes consensus and disagreements among multiple annotations to facilitate better segmentation.
arXiv Detail & Related papers (2023-03-15T07:31:55Z) - Rethinking Semi-Supervised Medical Image Segmentation: A
Variance-Reduction Perspective [51.70661197256033]
We propose ARCO, a semi-supervised contrastive learning framework with stratified group theory for medical image segmentation.
We first propose building ARCO through the concept of variance-reduced estimation and show that certain variance-reduction techniques are particularly beneficial in pixel/voxel-level segmentation tasks.
We experimentally validate our approaches on eight benchmarks, i.e., five 2D/3D medical and three semantic segmentation datasets, with different label settings.
arXiv Detail & Related papers (2023-02-03T13:50:25Z) - Efficient Bayesian Uncertainty Estimation for nnU-Net [3.8186085899889943]
We introduce a novel method to estimate nnU-Net uncertainty for medical image segmentation.
We boost the segmentation performance over the original nnU-Net via marginalizing multi-modal posterior models.
The proposed method further strengthens nnU-Net for medical image segmentation in terms of both segmentation accuracy and quality control.
arXiv Detail & Related papers (2022-12-12T23:12:19Z) - Reliable Joint Segmentation of Retinal Edema Lesions in OCT Images [55.83984261827332]
In this paper, we propose a novel reliable multi-scale wavelet-enhanced transformer network.
We develop a novel segmentation backbone that integrates a wavelet-enhanced feature extractor network and a multi-scale transformer module.
Our proposed method achieves better segmentation accuracy with a high degree of reliability as compared to other state-of-the-art segmentation approaches.
arXiv Detail & Related papers (2022-12-01T07:32:56Z) - CRISP - Reliable Uncertainty Estimation for Medical Image Segmentation [6.197149831796131]
We propose CRISP a ContRastive Image for uncertainty Prediction method.
At its core, CRISP implements a contrastive method to learn a joint latent space which encodes a distribution of valid segmentations.
We use this joint latent space to compare predictions to thousands of latent vectors and provide anatomically consistent uncertainty maps.
arXiv Detail & Related papers (2022-06-15T16:56:58Z) - Trustworthy Medical Segmentation with Uncertainty Estimation [0.7829352305480285]
This paper introduces a new Bayesian deep learning framework for uncertainty quantification in segmentation neural networks.
We evaluate the proposed framework on medical image segmentation data from Magnetic Resonances Imaging and Computed Tomography scans.
Our experiments on multiple benchmark datasets demonstrate that the proposed framework is more robust to noise and adversarial attacks as compared to state-of-the-art segmentation models.
arXiv Detail & Related papers (2021-11-10T22:46:05Z) - Enforcing Mutual Consistency of Hard Regions for Semi-supervised Medical
Image Segmentation [68.9233942579956]
We propose a novel mutual consistency network (MC-Net+) to exploit the unlabeled hard regions for semi-supervised medical image segmentation.
The MC-Net+ model is motivated by the observation that deep models trained with limited annotations are prone to output highly uncertain and easily mis-classified predictions.
We compare the segmentation results of the MC-Net+ with five state-of-the-art semi-supervised approaches on three public medical datasets.
arXiv Detail & Related papers (2021-09-21T04:47:42Z) - Estimating Uncertainty in Neural Networks for Cardiac MRI Segmentation:
A Benchmark Study [1.6222504666823843]
Convolutional neural networks (CNNs) have demonstrated promise in automated cardiac magnetic resonance imaging segmentation.
It is important to quantify segmentation uncertainty in order to know which segmentations could be problematic.
arXiv Detail & Related papers (2020-12-31T17:46:52Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.