Segmentation by Test-Time Optimization (TTO) for CBCT-based Adaptive
Radiation Therapy
- URL: http://arxiv.org/abs/2202.03978v1
- Date: Tue, 8 Feb 2022 16:34:22 GMT
- Title: Segmentation by Test-Time Optimization (TTO) for CBCT-based Adaptive
Radiation Therapy
- Authors: Xiao Liang, Jaehee Chun, Howard Morgan, Ti Bai, Dan Nguyen, Justin C.
Park, Steve Jiang
- Abstract summary: Traditional or deep learning (DL) based deformable image registration (DIR) can achieve improved results in many situations.
We propose a method called test-time optimization (TTO) to refine a pre-trained DL-based DIR population model.
Our proposed method is less susceptible to the generalizability problem, and thus can improve overall performance of different DL-based DIR models.
- Score: 2.5705729402510338
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Online adaptive radiotherapy (ART) requires accurate and efficient
auto-segmentation of target volumes and organs-at-risk (OARs) in mostly
cone-beam computed tomography (CBCT) images. Propagating expert-drawn contours
from the pre-treatment planning CT (pCT) through traditional or deep learning
(DL) based deformable image registration (DIR) can achieve improved results in
many situations. Typical DL-based DIR models are population based, that is,
trained with a dataset for a population of patients, so they may be affected by
the generalizability problem. In this paper, we propose a method called
test-time optimization (TTO) to refine a pre-trained DL-based DIR population
model, first for each individual test patient, and then progressively for each
fraction of online ART treatment. Our proposed method is less susceptible to
the generalizability problem, and thus can improve overall performance of
different DL-based DIR models by improving model accuracy, especially for
outliers. Our experiments used data from 239 patients with head and neck
squamous cell carcinoma to test the proposed method. Firstly, we trained a
population model with 200 patients, and then applied TTO to the remaining 39
test patients by refining the trained population model to obtain 39
individualized models. We compared each of the individualized models with the
population model in terms of segmentation accuracy. The number of patients with
at least 0.05 DSC improvement or 2 mm HD95 improvement by TTO averaged over the
17 selected structures for the state-of-the-art architecture Voxelmorph is 10
out of 39 test patients. The average time for deriving the individualized model
using TTO from the pre-trained population model is approximately four minutes.
When adapting the individualized model to a later fraction of the same patient,
the average time is reduced to about one minute and the accuracy is slightly
improved.
Related papers
- Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation [113.5002649181103]
Training open-source small multimodal models (SMMs) to bridge competency gaps for unmet clinical needs in radiology.
For training, we assemble a large dataset of over 697 thousand radiology image-text pairs.
For evaluation, we propose CheXprompt, a GPT-4-based metric for factuality evaluation, and demonstrate its parity with expert evaluation.
The inference of LlaVA-Rad is fast and can be performed on a single V100 GPU in private settings, offering a promising state-of-the-art tool for real-world clinical applications.
arXiv Detail & Related papers (2024-03-12T18:12:02Z) - Clinical Deterioration Prediction in Brazilian Hospitals Based on
Artificial Neural Networks and Tree Decision Models [56.93322937189087]
An extremely boosted neural network (XBNet) is used to predict clinical deterioration (CD)
The XGBoost model obtained the best results in predicting CD among Brazilian hospitals' data.
arXiv Detail & Related papers (2022-12-17T23:29:14Z) - Textual Data Augmentation for Patient Outcomes Prediction [67.72545656557858]
We propose a novel data augmentation method to generate artificial clinical notes in patients' Electronic Health Records.
We fine-tune the generative language model GPT-2 to synthesize labeled text with the original training data.
We evaluate our method on the most common patient outcome, i.e., the 30-day readmission rate.
arXiv Detail & Related papers (2022-11-13T01:07:23Z) - Identifying and mitigating bias in algorithms used to manage patients in
a pandemic [4.756860520861679]
Logistic regression models were created to predict COVID-19 mortality, ventilator status and inpatient status using a real-world dataset.
Models showed a 57% decrease in the number of biased trials.
After calibration, the average sensitivity of the predictive models increased from 0.527 to 0.955.
arXiv Detail & Related papers (2021-10-30T21:10:56Z) - Multi-institutional Validation of Two-Streamed Deep Learning Method for
Automated Delineation of Esophageal Gross Tumor Volume using planning-CT and
FDG-PETCT [14.312659667401302]
Current clinical workflow for esophageal gross tumor volume (GTV) contouring relies on manual delineation of high labor-costs and interuser variability.
To validate the clinical applicability of a deep learning (DL) multi-modality esophageal GTV contouring model, developed at 1 institution whereas tested at multiple ones.
arXiv Detail & Related papers (2021-10-11T13:56:09Z) - An Interpretable Web-based Glioblastoma Multiforme Prognosis Prediction
Tool using Random Forest Model [1.1024591739346292]
We propose predictive models that estimate GBM patients' health status of one-year after treatments.
We used total of 467 GBM patients' clinical profile consists of 13 features and two follow-up dates.
Our machine learning models suggest that the top three prognostic factors for GBM patient survival were MGMT gene promoter, the extent of resection, and age.
arXiv Detail & Related papers (2021-08-30T07:56:34Z) - A comparison of approaches to improve worst-case predictive model
performance over patient subpopulations [14.175321968797252]
Predictive models for clinical outcomes that are accurate on average in a patient population may underperform drastically for some subpopulations.
We identify approaches for model development and selection that consistently improve disaggregated and worst-case performance over subpopulations.
We find that, with relatively few exceptions, no approach performs better, for each patient subpopulation examined, than standard learning procedures.
arXiv Detail & Related papers (2021-08-27T13:10:00Z) - A multi-stage machine learning model on diagnosis of esophageal
manometry [50.591267188664666]
The framework includes deep-learning models at the swallow-level stage and feature-based machine learning models at the study-level stage.
This is the first artificial-intelligence-style model to automatically predict CC diagnosis of HRM study from raw multi-swallow data.
arXiv Detail & Related papers (2021-06-25T20:09:23Z) - Adversarial Sample Enhanced Domain Adaptation: A Case Study on
Predictive Modeling with Electronic Health Records [57.75125067744978]
We propose a data augmentation method to facilitate domain adaptation.
adversarially generated samples are used during domain adaptation.
Results confirm the effectiveness of our method and the generality on different tasks.
arXiv Detail & Related papers (2021-01-13T03:20:20Z) - Hemogram Data as a Tool for Decision-making in COVID-19 Management:
Applications to Resource Scarcity Scenarios [62.997667081978825]
COVID-19 pandemics has challenged emergency response systems worldwide, with widespread reports of essential services breakdown and collapse of health care structure.
This work describes a machine learning model derived from hemogram exam data performed in symptomatic patients.
Proposed models can predict COVID-19 qRT-PCR results in symptomatic individuals with high accuracy, sensitivity and specificity.
arXiv Detail & Related papers (2020-05-10T01:45:03Z) - Patient-Specific Finetuning of Deep Learning Models for Adaptive
Radiotherapy in Prostate CT [1.3124513975412255]
Contouring of the target volume and Organs-At-Risk (OARs) is a crucial step in radiotherapy treatment planning.
In this work, we leverage personalized anatomical knowledge accumulated over the treatment sessions, to improve the segmentation accuracy of a pre-trained Convolution Neural Network (CNN)
We investigate a transfer learning approach, fine-tuning the baseline CNN model to a specific patient, based on imaging acquired in earlier treatment fractions.
arXiv Detail & Related papers (2020-02-17T12:53:37Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.