Interpretable Graph Convolutional Network of Multi-Modality Brain
Imaging for Alzheimer's Disease Diagnosis
- URL: http://arxiv.org/abs/2204.13188v1
- Date: Wed, 27 Apr 2022 20:43:11 GMT
- Title: Interpretable Graph Convolutional Network of Multi-Modality Brain
Imaging for Alzheimer's Disease Diagnosis
- Authors: Houliang Zhou, Lifang He, Yu Zhang, Li Shen, Brian Chen
- Abstract summary: We propose an interpretable Graph Convolutional Network framework for the identification and classification of Alzheimer's disease.
We usedGrad-CAM technique to quantify the most discriminative features identified by GCN from brain connectivity patterns.
- Score: 14.894215698742924
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Identification of brain regions related to the specific neurological
disorders are of great importance for biomarker and diagnostic studies. In this
paper, we propose an interpretable Graph Convolutional Network (GCN) framework
for the identification and classification of Alzheimer's disease (AD) using
multi-modality brain imaging data. Specifically, we extended the Gradient Class
Activation Mapping (Grad-CAM) technique to quantify the most discriminative
features identified by GCN from brain connectivity patterns. We then utilized
them to find signature regions of interest (ROIs) by detecting the difference
of features between regions in healthy control (HC), mild cognitive impairment
(MCI), and AD groups. We conducted the experiments on the ADNI database with
imaging data from three modalities, including VBM-MRI, FDG-PET, and AV45-PET,
and showed that the ROI features learned by our method were effective for
enhancing the performances of both clinical score prediction and disease status
identification. It also successfully identified biomarkers associated with AD
and MCI.
Related papers
- Knowledge-Guided Prompt Learning for Lifespan Brain MR Image Segmentation [53.70131202548981]
We present a two-step segmentation framework employing Knowledge-Guided Prompt Learning (KGPL) for brain MRI.
Specifically, we first pre-train segmentation models on large-scale datasets with sub-optimal labels.
The introduction of knowledge-wise prompts captures semantic relationships between anatomical variability and biological processes.
arXiv Detail & Related papers (2024-07-31T04:32:43Z) - Trustworthy Enhanced Multi-view Multi-modal Alzheimer's Disease Prediction with Brain-wide Imaging Transcriptomics Data [9.325994464749998]
Brain transcriptomics provides insights into the molecular mechanisms by which the brain coordinates its functions and processes.
Existing multimodal methods for predicting Alzheimer's disease (AD) primarily rely on imaging and sometimes genetic data, often neglecting the transcriptomic basis of brain.
Here, we propose TMM, a trusted multiview multimodal graph attention framework for AD diagnosis using extensive brain-wide transcriptomics and imaging data.
arXiv Detail & Related papers (2024-06-21T08:39:24Z) - Multiple Instance Learning for Glioma Diagnosis using Hematoxylin and
Eosin Whole Slide Images: An Indian Cohort Study [31.789472128764036]
This study advances patient care with findings from rigorous multiple instance learning experimentations.
It establishes new performance benchmarks in glioma subtype classification across multiple datasets.
arXiv Detail & Related papers (2024-02-24T14:59:19Z) - Genetic InfoMax: Exploring Mutual Information Maximization in
High-Dimensional Imaging Genetics Studies [50.11449968854487]
Genome-wide association studies (GWAS) are used to identify relationships between genetic variations and specific traits.
Representation learning for imaging genetics is largely under-explored due to the unique challenges posed by GWAS.
We introduce a trans-modal learning framework Genetic InfoMax (GIM) to address the specific challenges of GWAS.
arXiv Detail & Related papers (2023-09-26T03:59:21Z) - UniBrain: Universal Brain MRI Diagnosis with Hierarchical
Knowledge-enhanced Pre-training [66.16134293168535]
We propose a hierarchical knowledge-enhanced pre-training framework for the universal brain MRI diagnosis, termed as UniBrain.
Specifically, UniBrain leverages a large-scale dataset of 24,770 imaging-report pairs from routine diagnostics.
arXiv Detail & Related papers (2023-09-13T09:22:49Z) - Attention-based 3D CNN with Multi-layer Features for Alzheimer's Disease
Diagnosis using Brain Images [21.514626584695897]
We propose an end-to-end 3D CNN framework for Alzheimer's disease diagnosis based on ResNet.
Our model can focus on key brain regions related to the disease diagnosis.
Our method was verified in ablation experiments with two modality images on 792 subjects.
arXiv Detail & Related papers (2023-08-10T15:53:35Z) - Behavior Score-Embedded Brain Encoder Network for Improved
Classification of Alzheimer Disease Using Resting State fMRI [36.40726715739385]
We propose a behavior score-embedded encoder network (BSEN) that integrates regularly adminstrated psychological tests information into the encoding procedure of representing subject's restingstate fMRI data.
BSEN is based on a 3D convolutional autoencoder structure with contrastive loss jointly optimized using behavior scores from MiniMental State Examination (MMSE) and Clinical Dementia Rating (CDR)
Our proposed classification framework of using BSEN achieved an overall recognition accuracy of 59.44% (3-class classification: AD, MCI and Healthy Control) and we further extracted the most discriminative regions between healthy control (HC) and
arXiv Detail & Related papers (2022-11-04T09:58:45Z) - Tensor-Based Multi-Modality Feature Selection and Regression for
Alzheimer's Disease Diagnosis [25.958167380664083]
We propose a novel tensor-based multi-modality feature selection and regression method for diagnosis and biomarker identification of Alzheimer's Disease (AD) and Mild Cognitive Impairment (MCI)
We present the practical advantages of our method for the analysis of ADNI data using three imaging modalities.
arXiv Detail & Related papers (2022-09-23T02:17:27Z) - Hierarchical Graph Convolutional Network Built by Multiscale Atlases for
Brain Disorder Diagnosis Using Functional Connectivity [48.75665245214903]
We propose a novel framework to perform multiscale FCN analysis for brain disorder diagnosis.
We first use a set of well-defined multiscale atlases to compute multiscale FCNs.
Then, we utilize biologically meaningful brain hierarchical relationships among the regions in multiscale atlases to perform nodal pooling.
arXiv Detail & Related papers (2022-09-22T04:17:57Z) - G-MIND: An End-to-End Multimodal Imaging-Genetics Framework for
Biomarker Identification and Disease Classification [49.53651166356737]
We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers.
We have evaluated our model on a population study of schizophrenia that includes two functional MRI (fMRI) paradigms and Single Nucleotide Polymorphism (SNP) data.
arXiv Detail & Related papers (2021-01-27T19:28:04Z) - A Graph Gaussian Embedding Method for Predicting Alzheimer's Disease
Progression with MEG Brain Networks [59.15734147867412]
Characterizing the subtle changes of functional brain networks associated with Alzheimer's disease (AD) is important for early diagnosis and prediction of disease progression.
We developed a new deep learning method, termed multiple graph Gaussian embedding model (MG2G)
We used MG2G to detect the intrinsic latent dimensionality of MEG brain networks, predict the progression of patients with mild cognitive impairment (MCI) to AD, and identify brain regions with network alterations related to MCI.
arXiv Detail & Related papers (2020-05-08T02:29:24Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.