Deep Representations for Time-varying Brain Datasets

• URL: http://arxiv.org/abs/2205.11648v1
• Date: Mon, 23 May 2022 21:57:31 GMT
• Title: Deep Representations for Time-varying Brain Datasets
• Authors: Sikun Lin, Shuyun Tang, Scott Grafton, Ambuj Singh
• Abstract summary: This paper builds an efficient graph neural network model that incorporates both region-mapped fMRI sequences and structural connectivities as inputs. We find good representations of the latent brain dynamics through learning sample-level adaptive adjacency matrices. These modules can be easily adapted to and are potentially useful for other applications outside the neuroscience domain.
• Score: 4.129225533930966
• License: http://creativecommons.org/licenses/by-nc-nd/4.0/
• Abstract: Finding an appropriate representation of dynamic activities in the brain is crucial for many downstream applications. Due to its highly dynamic nature, temporally averaged fMRI (functional magnetic resonance imaging) can only provide a narrow view of underlying brain activities. Previous works lack the ability to learn and interpret the latent dynamics in brain architectures. This paper builds an efficient graph neural network model that incorporates both region-mapped fMRI sequences and structural connectivities obtained from DWI (diffusion-weighted imaging) as inputs. We find good representations of the latent brain dynamics through learning sample-level adaptive adjacency matrices and performing a novel multi-resolution inner cluster smoothing. These modules can be easily adapted to and are potentially useful for other applications outside the neuroscience domain. We also attribute inputs with integrated gradients, which enables us to infer (1) highly involved brain connections and subnetworks for each task, (2) temporal keyframes of imaging sequences that characterize tasks, and (3) subnetworks that discriminate between individual subjects. This ability to identify critical subnetworks that characterize signal states across heterogeneous tasks and individuals is of great importance to neuroscience and other scientific domains. Extensive experiments and ablation studies demonstrate our proposed method's superiority and efficiency in spatial-temporal graph signal modeling with insightful interpretations of brain dynamics.

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