COVID-19: An exploration of consecutive systemic barriers to
pathogen-related data sharing during a pandemic
- URL: http://arxiv.org/abs/2205.12098v3
- Date: Fri, 22 Dec 2023 12:23:02 GMT
- Title: COVID-19: An exploration of consecutive systemic barriers to
pathogen-related data sharing during a pandemic
- Authors: Yo Yehudi, Lukas Hughes-Noehrer, Carole Goble and Caroline Jay
- Abstract summary: In 2020, the COVID-19 pandemic resulted in a rapid response from governments and researchers worldwide.
As of late 2023, over millions have died as a result of COVID-19.
Data professionals working with pandemic-relevant data often face significant systemic barriers to accessing, sharing or re-using this data.
- Score: 3.192308005611312
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: In 2020, the COVID-19 pandemic resulted in a rapid response from governments
and researchers worldwide. As of late 2023, over millions have died as a result
of COVID-19, with many COVID-19 survivors going on to experience long-term
effects weeks, months, or years after their illness. Despite this staggering
toll, those who work with pandemic-relevant data often face significant
systemic barriers to accessing, sharing or re-using this data. In this paper we
report results of a study, where we interviewed data professionals working with
COVID-19-relevant data types including social media, mobility, viral genome,
testing, infection, hospital admission, and deaths. These data types are
variously used for pandemic spread modelling, healthcare system strain
awareness, and devising therapeutic treatments for COVID-19. Barriers to data
access, sharing and re-use include the cost of access to data (primarily
certain healthcare sources and mobility data from mobile phone carriers), human
throughput bottlenecks, unclear pathways to request access to data,
unnecessarily strict access controls and data re-use policies, unclear data
provenance, inability to link separate data sources that could collectively
create a more complete picture, poor adherence to metadata standards, and a
lack of computer-suitable data formats.
Related papers
- Human Behavior in the Time of COVID-19: Learning from Big Data [71.26355067309193]
Since March 2020, there have been over 600 million confirmed cases of COVID-19 and more than six million deaths.
The pandemic has impacted and even changed human behavior in almost every aspect.
Researchers have been employing big data techniques such as natural language processing, computer vision, audio signal processing, frequent pattern mining, and machine learning.
arXiv Detail & Related papers (2023-03-23T17:19:26Z) - Tracking the State and Behavior of People in Response to COVID-1 19
Through the Fusion of Multiple Longitudinal Data Streams [2.477349483168562]
We describe a rich panel dataset of active and passive data from U.S. residents collected between August 2020 and July 2021.
Such a dataset allows important research questions to be answered; for example, to determine the factors underlying the heterogeneous behavioral responses to COVID-19 restrictions imposed by local governments.
arXiv Detail & Related papers (2022-09-23T18:49:23Z) - When Accuracy Meets Privacy: Two-Stage Federated Transfer Learning
Framework in Classification of Medical Images on Limited Data: A COVID-19
Case Study [77.34726150561087]
COVID-19 pandemic has spread rapidly and caused a shortage of global medical resources.
CNN has been widely utilized and verified in analyzing medical images.
arXiv Detail & Related papers (2022-03-24T02:09:41Z) - Global Tweet Mentions of COVID-19 [3.3043776328952226]
We present an open-source dataset of 1.92 million keyword-selected Twitter posts, updated weekly from January 2020 to present.
The dashboard presents 100% of the geotagged tweets that contain keywords or hashtags related COVID-19.
With emerging COVID variants but ongoing vaccine hesitancy and resistance, this dataset could be used by researchers to study numerous aspects of COVID-19.
arXiv Detail & Related papers (2021-08-13T20:21:29Z) - COVIDx-US -- An open-access benchmark dataset of ultrasound imaging data
for AI-driven COVID-19 analytics [116.6248556979572]
COVIDx-US is an open-access benchmark dataset of COVID-19 related ultrasound imaging data.
It consists of 93 lung ultrasound videos and 10,774 processed images of patients infected with SARS-CoV-2 pneumonia, non-SARS-CoV-2 pneumonia, as well as healthy control cases.
arXiv Detail & Related papers (2021-03-18T03:31:33Z) - COVID-19 Digital Contact Tracing Applications and Techniques: A Review
Post Initial Deployments [2.05040847923906]
coronavirus disease 2019 (COVID-19) is a severe global pandemic that has claimed millions of lives and continues to overwhelm public health systems.
To increase the effectiveness of contact tracing, countries across the globe are leveraging advancements in mobile technology and Internet of Things.
arXiv Detail & Related papers (2021-02-25T10:18:40Z) - FLOP: Federated Learning on Medical Datasets using Partial Networks [84.54663831520853]
COVID-19 Disease due to the novel coronavirus has caused a shortage of medical resources.
Different data-driven deep learning models have been developed to mitigate the diagnosis of COVID-19.
The data itself is still scarce due to patient privacy concerns.
We propose a simple yet effective algorithm, named textbfFederated textbfL textbfon Medical datasets using textbfPartial Networks (FLOP)
arXiv Detail & Related papers (2021-02-10T01:56:58Z) - Data Mining Approach to Analyze Covid19 Dataset of Brazilian Patients [0.0]
The pandemic originated by coronavirus(covid-19), name coined by World Health Organization during the first month in 2020.
Almost all the countries presented covid19 positive cases and governments are choosing different health policies to stop the infection.
One of top countries with more infections is Brazil, until August 11 had a total of 3,112,393 cases.
arXiv Detail & Related papers (2020-08-26T02:21:56Z) - Understanding the temporal evolution of COVID-19 research through
machine learning and natural language processing [66.63200823918429]
The outbreak of the novel coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been continuously affecting human lives and communities around the world.
We used multiple data sources, i.e., PubMed and ArXiv, and built several machine learning models to characterize the landscape of current COVID-19 research.
Our findings confirm the types of research available in PubMed and ArXiv differ significantly, with the former exhibiting greater diversity in terms of COVID-19 related issues.
arXiv Detail & Related papers (2020-07-22T18:02:39Z) - A County-level Dataset for Informing the United States' Response to
COVID-19 [5.682299443164938]
We present a dataset that aggregates relevant data from governmental, journalistic, and academic sources on the U.S. county level.
Our dataset contains more than 300 variables that summarize population estimates, demographics, ethnicity, housing, education, employment and income, climate, transit, scores, and healthcare system-related metrics.
arXiv Detail & Related papers (2020-04-01T05:07:27Z) - Mapping the Landscape of Artificial Intelligence Applications against
COVID-19 [59.30734371401316]
COVID-19, the disease caused by the SARS-CoV-2 virus, has been declared a pandemic by the World Health Organization.
We present an overview of recent studies using Machine Learning and, more broadly, Artificial Intelligence to tackle many aspects of the COVID-19 crisis.
arXiv Detail & Related papers (2020-03-25T12:30:33Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.