MultiCrossViT: Multimodal Vision Transformer for Schizophrenia
Prediction using Structural MRI and Functional Network Connectivity Data
- URL: http://arxiv.org/abs/2211.06726v1
- Date: Sat, 12 Nov 2022 19:07:25 GMT
- Title: MultiCrossViT: Multimodal Vision Transformer for Schizophrenia
Prediction using Structural MRI and Functional Network Connectivity Data
- Authors: Yuda Bi, Anees Abrol, Zening Fu, Vince Calhoun
- Abstract summary: Vision Transformer (ViT) is a pioneering deep learning framework that can address real-world computer vision issues.
ViTs are proven to outperform traditional deep learning models, such as convolutional neural networks (CNNs)
- Score: 0.0
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Vision Transformer (ViT) is a pioneering deep learning framework that can
address real-world computer vision issues, such as image classification and
object recognition. Importantly, ViTs are proven to outperform traditional deep
learning models, such as convolutional neural networks (CNNs). Relatively
recently, a number of ViT mutations have been transplanted into the field of
medical imaging, thereby resolving a variety of critical classification and
segmentation challenges, especially in terms of brain imaging data. In this
work, we provide a novel multimodal deep learning pipeline, MultiCrossViT,
which is capable of analyzing both structural MRI (sMRI) and static functional
network connectivity (sFNC) data for the prediction of schizophrenia disease.
On a dataset with minimal training subjects, our novel model can achieve an AUC
of 0.832. Finally, we visualize multiple brain regions and covariance patterns
most relevant to schizophrenia based on the resulting ViT attention maps by
extracting features from transformer encoders.
Related papers
- TBConvL-Net: A Hybrid Deep Learning Architecture for Robust Medical Image Segmentation [6.013821375459473]
We introduce a novel deep learning architecture for medical image segmentation.
Our proposed model shows consistent improvement over the state of the art on ten publicly available datasets.
arXiv Detail & Related papers (2024-09-05T09:14:03Z) - MindFormer: Semantic Alignment of Multi-Subject fMRI for Brain Decoding [50.55024115943266]
We introduce a novel semantic alignment method of multi-subject fMRI signals using so-called MindFormer.
This model is specifically designed to generate fMRI-conditioned feature vectors that can be used for conditioning Stable Diffusion model for fMRI- to-image generation or large language model (LLM) for fMRI-to-text generation.
Our experimental results demonstrate that MindFormer generates semantically consistent images and text across different subjects.
arXiv Detail & Related papers (2024-05-28T00:36:25Z) - See Through Their Minds: Learning Transferable Neural Representation from Cross-Subject fMRI [32.40827290083577]
Deciphering visual content from functional Magnetic Resonance Imaging (fMRI) helps illuminate the human vision system.
Previous approaches primarily employ subject-specific models, sensitive to training sample size.
We propose shallow subject-specific adapters to map cross-subject fMRI data into unified representations.
During training, we leverage both visual and textual supervision for multi-modal brain decoding.
arXiv Detail & Related papers (2024-03-11T01:18:49Z) - SDR-Former: A Siamese Dual-Resolution Transformer for Liver Lesion
Classification Using 3D Multi-Phase Imaging [59.78761085714715]
This study proposes a novel Siamese Dual-Resolution Transformer (SDR-Former) framework for liver lesion classification.
The proposed framework has been validated through comprehensive experiments on two clinical datasets.
To support the scientific community, we are releasing our extensive multi-phase MR dataset for liver lesion analysis to the public.
arXiv Detail & Related papers (2024-02-27T06:32:56Z) - Learning Multimodal Volumetric Features for Large-Scale Neuron Tracing [72.45257414889478]
We aim to reduce human workload by predicting connectivity between over-segmented neuron pieces.
We first construct a dataset, named FlyTracing, that contains millions of pairwise connections of segments expanding the whole fly brain.
We propose a novel connectivity-aware contrastive learning method to generate dense volumetric EM image embedding.
arXiv Detail & Related papers (2024-01-05T19:45:12Z) - Enhancing CT Image synthesis from multi-modal MRI data based on a
multi-task neural network framework [16.864720020158906]
We propose a versatile multi-task neural network framework, based on an enhanced Transformer U-Net architecture.
We decompose the traditional problem of synthesizing CT images into distinct subtasks.
To enhance the framework's versatility in handling multi-modal data, we expand the model with multiple image channels.
arXiv Detail & Related papers (2023-12-13T18:22:38Z) - Affine-Consistent Transformer for Multi-Class Cell Nuclei Detection [76.11864242047074]
We propose a novel Affine-Consistent Transformer (AC-Former), which directly yields a sequence of nucleus positions.
We introduce an Adaptive Affine Transformer (AAT) module, which can automatically learn the key spatial transformations to warp original images for local network training.
Experimental results demonstrate that the proposed method significantly outperforms existing state-of-the-art algorithms on various benchmarks.
arXiv Detail & Related papers (2023-10-22T02:27:02Z) - Convolutional neural network based on sparse graph attention mechanism
for MRI super-resolution [0.34410212782758043]
Medical image super-resolution (SR) reconstruction using deep learning techniques can enhance lesion analysis and assist doctors in improving diagnostic efficiency and accuracy.
Existing deep learning-based SR methods rely on convolutional neural networks (CNNs), which inherently limit the expressive capabilities of these models.
We propose an A-network that utilizes multiple convolution operator feature extraction modules (MCO) for extracting image features.
arXiv Detail & Related papers (2023-05-29T06:14:22Z) - Data-Efficient Vision Transformers for Multi-Label Disease
Classification on Chest Radiographs [55.78588835407174]
Vision Transformers (ViTs) have not been applied to this task despite their high classification performance on generic images.
ViTs do not rely on convolutions but on patch-based self-attention and in contrast to CNNs, no prior knowledge of local connectivity is present.
Our results show that while the performance between ViTs and CNNs is on par with a small benefit for ViTs, DeiTs outperform the former if a reasonably large data set is available for training.
arXiv Detail & Related papers (2022-08-17T09:07:45Z) - Functional2Structural: Cross-Modality Brain Networks Representation
Learning [55.24969686433101]
Graph mining on brain networks may facilitate the discovery of novel biomarkers for clinical phenotypes and neurodegenerative diseases.
We propose a novel graph learning framework, known as Deep Signed Brain Networks (DSBN), with a signed graph encoder.
We validate our framework on clinical phenotype and neurodegenerative disease prediction tasks using two independent, publicly available datasets.
arXiv Detail & Related papers (2022-05-06T03:45:36Z) - ResViT: Residual vision transformers for multi-modal medical image
synthesis [0.0]
We propose a novel generative adversarial approach for medical image synthesis, ResViT, to combine local precision of convolution operators with contextual sensitivity of vision transformers.
Our results indicate the superiority of ResViT against competing methods in terms of qualitative observations and quantitative metrics.
arXiv Detail & Related papers (2021-06-30T12:57:37Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.