Empirical Analysis of a Segmentation Foundation Model in Prostate
Imaging
- URL: http://arxiv.org/abs/2307.03266v3
- Date: Mon, 2 Oct 2023 20:47:01 GMT
- Title: Empirical Analysis of a Segmentation Foundation Model in Prostate
Imaging
- Authors: Heejong Kim, Victor Ion Butoi, Adrian V. Dalca, Daniel J.A. Margolis,
Mert R. Sabuncu
- Abstract summary: We consider a recently developed foundation model for medical image segmentation, UniverSeg.
We conduct an empirical evaluation study in the context of prostate imaging and compare it against the conventional approach of training a task-specific segmentation model.
- Score: 9.99042549094606
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Most state-of-the-art techniques for medical image segmentation rely on
deep-learning models. These models, however, are often trained on
narrowly-defined tasks in a supervised fashion, which requires expensive
labeled datasets. Recent advances in several machine learning domains, such as
natural language generation have demonstrated the feasibility and utility of
building foundation models that can be customized for various downstream tasks
with little to no labeled data. This likely represents a paradigm shift for
medical imaging, where we expect that foundation models may shape the future of
the field. In this paper, we consider a recently developed foundation model for
medical image segmentation, UniverSeg. We conduct an empirical evaluation study
in the context of prostate imaging and compare it against the conventional
approach of training a task-specific segmentation model. Our results and
discussion highlight several important factors that will likely be important in
the development and adoption of foundation models for medical image
segmentation.
Related papers
- Unleashing the Potential of the Diffusion Model in Few-shot Semantic Segmentation [56.87049651707208]
Few-shot Semantic has evolved into In-context tasks, morphing into a crucial element in assessing generalist segmentation models.
Our initial focus lies in understanding how to facilitate interaction between the query image and the support image, resulting in the proposal of a KV fusion method within the self-attention framework.
Based on our analysis, we establish a simple and effective framework named DiffewS, maximally retaining the original Latent Diffusion Model's generative framework.
arXiv Detail & Related papers (2024-10-03T10:33:49Z) - Medical Vision-Language Pre-Training for Brain Abnormalities [96.1408455065347]
We show how to automatically collect medical image-text aligned data for pretraining from public resources such as PubMed.
In particular, we present a pipeline that streamlines the pre-training process by initially collecting a large brain image-text dataset.
We also investigate the unique challenge of mapping subfigures to subcaptions in the medical domain.
arXiv Detail & Related papers (2024-04-27T05:03:42Z) - Beyond Pixel-Wise Supervision for Medical Image Segmentation: From Traditional Models to Foundation Models [7.987836953849249]
Existing segmentation algorithms mostly rely on the availability of fully annotated images with pixel-wise annotations for training.
To alleviate this challenge, there has been a growing focus on developing segmentation methods that can train deep models with weak annotations.
The emergence of vision foundation models, notably the Segment Anything Model (SAM), has introduced innovative capabilities for segmentation tasks using weak annotations.
arXiv Detail & Related papers (2024-04-20T02:40:49Z) - Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation [113.5002649181103]
Training open-source small multimodal models (SMMs) to bridge competency gaps for unmet clinical needs in radiology.
For training, we assemble a large dataset of over 697 thousand radiology image-text pairs.
For evaluation, we propose CheXprompt, a GPT-4-based metric for factuality evaluation, and demonstrate its parity with expert evaluation.
The inference of LlaVA-Rad is fast and can be performed on a single V100 GPU in private settings, offering a promising state-of-the-art tool for real-world clinical applications.
arXiv Detail & Related papers (2024-03-12T18:12:02Z) - OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models
in Medicine [55.29668193415034]
We present OpenMEDLab, an open-source platform for multi-modality foundation models.
It encapsulates solutions of pioneering attempts in prompting and fine-tuning large language and vision models for frontline clinical and bioinformatic applications.
It opens access to a group of pre-trained foundation models for various medical image modalities, clinical text, protein engineering, etc.
arXiv Detail & Related papers (2024-02-28T03:51:02Z) - Segment Anything Model for Medical Image Segmentation: Current
Applications and Future Directions [8.216028136706948]
The recent introduction of the Segment Anything Model (SAM) signifies a noteworthy expansion of the prompt-driven paradigm into the domain of image segmentation.
We provide a comprehensive overview of recent endeavors aimed at extending the efficacy of SAM to medical image segmentation tasks.
We explore potential avenues for future research directions in SAM's role within medical image segmentation.
arXiv Detail & Related papers (2024-01-07T14:25:42Z) - On the Out of Distribution Robustness of Foundation Models in Medical
Image Segmentation [47.95611203419802]
Foundations for vision and language, pre-trained on extensive sets of natural image and text data, have emerged as a promising approach.
We compare the generalization performance to unseen domains of various pre-trained models after being fine-tuned on the same in-distribution dataset.
We further developed a new Bayesian uncertainty estimation for frozen models and used them as an indicator to characterize the model's performance on out-of-distribution data.
arXiv Detail & Related papers (2023-11-18T14:52:10Z) - Foundational Models in Medical Imaging: A Comprehensive Survey and
Future Vision [6.2847894163744105]
Foundation models are large-scale, pre-trained deep-learning models adapted to a wide range of downstream tasks.
These models facilitate contextual reasoning, generalization, and prompt capabilities at test time.
Capitalizing on the advances in computer vision, medical imaging has also marked a growing interest in these models.
arXiv Detail & Related papers (2023-10-28T12:08:12Z) - From CNN to Transformer: A Review of Medical Image Segmentation Models [7.3150850275578145]
Deep learning for medical image segmentation has become a prevalent trend.
In this paper, we conduct a survey of the most representative four medical image segmentation models in recent years.
We theoretically analyze the characteristics of these models and quantitatively evaluate their performance on two benchmark datasets.
arXiv Detail & Related papers (2023-08-10T02:48:57Z) - Towards Segment Anything Model (SAM) for Medical Image Segmentation: A
Survey [8.76496233192512]
We discuss efforts to extend the success of the Segment Anything Model to medical image segmentation tasks.
Many insights are drawn to guide future research to develop foundation models for medical image analysis.
arXiv Detail & Related papers (2023-05-05T16:48:45Z) - Weakly supervised multiple instance learning histopathological tumor
segmentation [51.085268272912415]
We propose a weakly supervised framework for whole slide imaging segmentation.
We exploit a multiple instance learning scheme for training models.
The proposed framework has been evaluated on multi-locations and multi-centric public data from The Cancer Genome Atlas and the PatchCamelyon dataset.
arXiv Detail & Related papers (2020-04-10T13:12:47Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.