TBSS++: A novel computational method for Tract-Based Spatial Statistics
- URL: http://arxiv.org/abs/2307.05387v1
- Date: Fri, 7 Jul 2023 22:12:51 GMT
- Title: TBSS++: A novel computational method for Tract-Based Spatial Statistics
- Authors: Davood Karimi, Hamza Kebiri, and Ali Gholipour
- Abstract summary: Cross-subject tract-specific analysis is one of the most common computations in dMRI.
The accuracy and reliability of these studies hinges on the ability to compare precisely the same white matter tracts across subjects.
We present a new computational framework that overcomes the limitations of existing methods.
- Score: 6.1908590616944785
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Diffusion-weighted magnetic resonance imaging (dMRI) is widely used to assess
the brain white matter. One of the most common computations in dMRI involves
cross-subject tract-specific analysis, whereby dMRI-derived biomarkers are
compared between cohorts of subjects. The accuracy and reliability of these
studies hinges on the ability to compare precisely the same white matter tracts
across subjects. This is an intricate and error-prone computation. Existing
computational methods such as Tract-Based Spatial Statistics (TBSS) suffer from
a host of shortcomings and limitations that can seriously undermine the
validity of the results. We present a new computational framework that
overcomes the limitations of existing methods via (i) accurate segmentation of
the tracts, and (ii) precise registration of data from different
subjects/scans. The registration is based on fiber orientation distributions.
To further improve the alignment of cross-subject data, we create detailed
atlases of white matter tracts. These atlases serve as an unbiased reference
space where the data from all subjects is registered for comparison. Extensive
evaluations show that, compared with TBSS, our proposed framework offers
significantly higher reproducibility and robustness to data perturbations. Our
method promises a drastic improvement in accuracy and reproducibility of
cross-subject dMRI studies that are routinely used in neuroscience and medical
research.
Related papers
- Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI [10.096809077954095]
An incomplete field-of-view (FOV) in diffusion magnetic resonance imaging (dMRI) can severely hinder the volumetric and bundle analyses of whole-brain white matter connectivity.
We propose a novel framework for imputing dMRI scans in the incomplete part of the FOV by integrating the learned diffusion features in the acquired part of the FOV to the complete brain anatomical structure.
arXiv Detail & Related papers (2024-09-20T18:41:29Z) - Anatomically Constrained Tractography of the Fetal Brain [6.112565873653592]
We advocate for anatomically constrained tractography based on an accurate segmentation of the fetal brain tissue directly in the dMRI space.
Experiments on independent test data show that this method can accurately segment the fetal brain tissue and drastically improve tractography results.
arXiv Detail & Related papers (2024-03-04T19:56:19Z) - Few-shot learning for COVID-19 Chest X-Ray Classification with
Imbalanced Data: An Inter vs. Intra Domain Study [49.5374512525016]
Medical image datasets are essential for training models used in computer-aided diagnosis, treatment planning, and medical research.
Some challenges are associated with these datasets, including variability in data distribution, data scarcity, and transfer learning issues when using models pre-trained from generic images.
We propose a methodology based on Siamese neural networks in which a series of techniques are integrated to mitigate the effects of data scarcity and distribution imbalance.
arXiv Detail & Related papers (2024-01-18T16:59:27Z) - Direct segmentation of brain white matter tracts in diffusion MRI [5.907053978336196]
Brain white matter consists of tracts that connect distinct regions of the brain.
Current segmentation methods rely on intermediate computations that can result in unnecessary errors.
We propose a new deep learning method that segments these tracts directly from the diffusion MRI data.
arXiv Detail & Related papers (2023-07-05T11:59:46Z) - Superficial White Matter Analysis: An Efficient Point-cloud-based Deep
Learning Framework with Supervised Contrastive Learning for Consistent
Tractography Parcellation across Populations and dMRI Acquisitions [68.41088365582831]
White matter parcellation classifies tractography streamlines into clusters or anatomically meaningful tracts.
Most parcellation methods focus on the deep white matter (DWM), whereas fewer methods address the superficial white matter (SWM) due to its complexity.
We propose a novel two-stage deep-learning-based framework, Superficial White Matter Analysis (SupWMA), that performs an efficient parcellation of 198 SWM clusters from whole-brain tractography.
arXiv Detail & Related papers (2022-07-18T23:07:53Z) - White Matter Tracts are Point Clouds: Neuropsychological Score
Prediction and Critical Region Localization via Geometric Deep Learning [68.5548609642999]
We propose a deep-learning-based framework for neuropsychological score prediction using white matter tract data.
We represent the arcuate fasciculus (AF) as a point cloud with microstructure measurements at each point.
We improve prediction performance with the proposed Paired-Siamese Loss that utilizes information about differences between continuous neuropsychological scores.
arXiv Detail & Related papers (2022-07-06T02:03:28Z) - Weakly-supervised Biomechanically-constrained CT/MRI Registration of the
Spine [72.85011943179894]
We propose a weakly-supervised deep learning framework that preserves the rigidity and the volume of each vertebra while maximizing the accuracy of the registration.
We specifically design these losses to depend only on the CT label maps since automatic vertebra segmentation in CT gives more accurate results contrary to MRI.
Our results show that adding the anatomy-aware losses increases the plausibility of the inferred transformation while keeping the accuracy untouched.
arXiv Detail & Related papers (2022-05-16T10:59:55Z) - The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients [31.567542945171834]
We describe the Brain Tumor Sequence Registration (BraTS-Reg) challenge.
BraTS-Reg is the first public benchmark environment for deformable registration algorithms.
The aim of BraTS-Reg is to continue to serve as an active resource for research.
arXiv Detail & Related papers (2021-12-13T19:25:16Z) - Fader Networks for domain adaptation on fMRI: ABIDE-II study [68.5481471934606]
We use 3D convolutional autoencoders to build the domain irrelevant latent space image representation and demonstrate this method to outperform existing approaches on ABIDE data.
arXiv Detail & Related papers (2020-10-14T16:50:50Z) - Statistical control for spatio-temporal MEG/EEG source imaging with
desparsified multi-task Lasso [102.84915019938413]
Non-invasive techniques like magnetoencephalography (MEG) or electroencephalography (EEG) offer promise of non-invasive techniques.
The problem of source localization, or source imaging, poses however a high-dimensional statistical inference challenge.
We propose an ensemble of desparsified multi-task Lasso (ecd-MTLasso) to deal with this problem.
arXiv Detail & Related papers (2020-09-29T21:17:16Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.