Through their eyes: multi-subject Brain Decoding with simple alignment
techniques
- URL: http://arxiv.org/abs/2309.00627v1
- Date: Tue, 1 Aug 2023 16:07:22 GMT
- Title: Through their eyes: multi-subject Brain Decoding with simple alignment
techniques
- Authors: Matteo Ferrante, Tommaso Boccato, Nicola Toschi
- Abstract summary: Cross-subject brain decoding is feasible, even using around 10% of the total data, or 982 common images.
This could pave the way for more efficient experiments and further advancements in the field.
- Score: 0.13812010983144798
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Previous brain decoding research primarily involves single-subject studies,
reconstructing stimuli via fMRI activity from the same subject. Our study aims
to introduce a generalization technique for cross-subject brain decoding,
facilitated by exploring data alignment methods. We utilized the NSD dataset, a
comprehensive 7T fMRI vision experiment involving multiple subjects exposed to
9841 images, 982 of which were viewed by all. Our approach involved training a
decoding model on one subject, aligning others' data to this space, and testing
the decoding on the second subject. We compared ridge regression, hyper
alignment, and anatomical alignment techniques for fMRI data alignment. We
established that cross-subject brain decoding is feasible, even using around
10% of the total data, or 982 common images, with comparable performance to
single-subject decoding. Ridge regression was the best method for functional
alignment. Through subject alignment, we achieved superior brain decoding and a
potential 90% reduction in scan time. This could pave the way for more
efficient experiments and further advancements in the field, typically
requiring an exorbitant 20-hour scan time per subject.
Related papers
- Knowledge-Guided Prompt Learning for Lifespan Brain MR Image Segmentation [53.70131202548981]
We present a two-step segmentation framework employing Knowledge-Guided Prompt Learning (KGPL) for brain MRI.
Specifically, we first pre-train segmentation models on large-scale datasets with sub-optimal labels.
The introduction of knowledge-wise prompts captures semantic relationships between anatomical variability and biological processes.
arXiv Detail & Related papers (2024-07-31T04:32:43Z) - MindEye2: Shared-Subject Models Enable fMRI-To-Image With 1 Hour of Data [3.4519044254894515]
This work showcases high-quality reconstructions using only 1 hour of fMRI training data.
MindEye2 demonstrates how accurate reconstructions of perception are possible from a single visit to the MRI facility.
arXiv Detail & Related papers (2024-03-17T13:15:22Z) - Aligning brain functions boosts the decoding of visual semantics in
novel subjects [3.226564454654026]
We propose to boost brain decoding by aligning brain responses to videos and static images across subjects.
Our method improves out-of-subject decoding performance by up to 75%.
It also outperforms classical single-subject approaches when fewer than 100 minutes of data is available for the tested subject.
arXiv Detail & Related papers (2023-12-11T15:55:20Z) - Brain-ID: Learning Contrast-agnostic Anatomical Representations for
Brain Imaging [11.06907516321673]
We introduce Brain-ID, an anatomical representation learning model for brain imaging.
With the proposed "mild-to-severe" intrasubject generation, Brain-ID is robust to the subject-specific brain anatomy.
We present new metrics to validate the intra- and inter-subject robustness, and evaluate their performance on four downstream applications.
arXiv Detail & Related papers (2023-11-28T16:16:10Z) - fMRI-PTE: A Large-scale fMRI Pretrained Transformer Encoder for
Multi-Subject Brain Activity Decoding [54.17776744076334]
We propose fMRI-PTE, an innovative auto-encoder approach for fMRI pre-training.
Our approach involves transforming fMRI signals into unified 2D representations, ensuring consistency in dimensions and preserving brain activity patterns.
Our contributions encompass introducing fMRI-PTE, innovative data transformation, efficient training, a novel learning strategy, and the universal applicability of our approach.
arXiv Detail & Related papers (2023-11-01T07:24:22Z) - UniBrain: Universal Brain MRI Diagnosis with Hierarchical
Knowledge-enhanced Pre-training [66.16134293168535]
We propose a hierarchical knowledge-enhanced pre-training framework for the universal brain MRI diagnosis, termed as UniBrain.
Specifically, UniBrain leverages a large-scale dataset of 24,770 imaging-report pairs from routine diagnostics.
arXiv Detail & Related papers (2023-09-13T09:22:49Z) - FAST-AID Brain: Fast and Accurate Segmentation Tool using Artificial
Intelligence Developed for Brain [0.8376091455761259]
A novel deep learning method is proposed for fast and accurate segmentation of the human brain into 132 regions.
The proposed model uses an efficient U-Net-like network and benefits from the intersection points of different views and hierarchical relations.
The proposed method can be applied to brain MRI data including skull or any other artifacts without preprocessing the images or a drop in performance.
arXiv Detail & Related papers (2022-08-30T16:06:07Z) - Cross-Modality Deep Feature Learning for Brain Tumor Segmentation [158.8192041981564]
This paper proposes a novel cross-modality deep feature learning framework to segment brain tumors from the multi-modality MRI data.
The core idea is to mine rich patterns across the multi-modality data to make up for the insufficient data scale.
Comprehensive experiments are conducted on the BraTS benchmarks, which show that the proposed cross-modality deep feature learning framework can effectively improve the brain tumor segmentation performance.
arXiv Detail & Related papers (2022-01-07T07:46:01Z) - Deep Transfer Learning for Brain Magnetic Resonance Image Multi-class
Classification [0.6117371161379209]
We have developed a framework that uses Deep Transfer Learning to perform a multi-classification of tumors in the brain MRI images.
Using the novel dataset and two publicly available MRI brain datasets, this proposed approach attained a classification accuracy of 86.40%.
Results of our experiments significantly demonstrate our proposed framework for transfer learning is a potential and effective method for brain tumor multi-classification tasks.
arXiv Detail & Related papers (2021-06-14T12:19:27Z) - Fader Networks for domain adaptation on fMRI: ABIDE-II study [68.5481471934606]
We use 3D convolutional autoencoders to build the domain irrelevant latent space image representation and demonstrate this method to outperform existing approaches on ABIDE data.
arXiv Detail & Related papers (2020-10-14T16:50:50Z) - Deep Representational Similarity Learning for analyzing neural
signatures in task-based fMRI dataset [81.02949933048332]
This paper develops Deep Representational Similarity Learning (DRSL), a deep extension of Representational Similarity Analysis (RSA)
DRSL is appropriate for analyzing similarities between various cognitive tasks in fMRI datasets with a large number of subjects.
arXiv Detail & Related papers (2020-09-28T18:30:14Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.