Deep learning in computed tomography pulmonary angiography imaging: a
dual-pronged approach for pulmonary embolism detection
- URL: http://arxiv.org/abs/2311.05197v4
- Date: Fri, 5 Jan 2024 12:09:38 GMT
- Title: Deep learning in computed tomography pulmonary angiography imaging: a
dual-pronged approach for pulmonary embolism detection
- Authors: Fabiha Bushra, Muhammad E. H. Chowdhury, Rusab Sarmun, Saidul Kabir,
Menatalla Said, Sohaib Bassam Zoghoul, Adam Mushtak, Israa Al-Hashimi,
Abdulrahman Alqahtani, Anwarul Hasan
- Abstract summary: The aim of this study is to leverage deep learning techniques to enhance the Computer Assisted Diagnosis (CAD) of Pulmonary Embolism (PE)
Our classification system includes an Attention-Guided Convolutional Neural Network (AG-CNN) that uses local context by employing an attention mechanism.
AG-CNN achieves robust performance on the FUMPE dataset, achieving an AUROC of 0.927, sensitivity of 0.862, specificity of 0.879, and an F1-score of 0.805 with the Inception-v3 backbone architecture.
- Score: 0.0
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: The increasing reliance on Computed Tomography Pulmonary Angiography (CTPA)
for Pulmonary Embolism (PE) diagnosis presents challenges and a pressing need
for improved diagnostic solutions. The primary objective of this study is to
leverage deep learning techniques to enhance the Computer Assisted Diagnosis
(CAD) of PE. With this aim, we propose a classifier-guided detection approach
that effectively leverages the classifier's probabilistic inference to direct
the detection predictions, marking a novel contribution in the domain of
automated PE diagnosis. Our classification system includes an Attention-Guided
Convolutional Neural Network (AG-CNN) that uses local context by employing an
attention mechanism. This approach emulates a human expert's attention by
looking at both global appearances and local lesion regions before making a
decision. The classifier demonstrates robust performance on the FUMPE dataset,
achieving an AUROC of 0.927, sensitivity of 0.862, specificity of 0.879, and an
F1-score of 0.805 with the Inception-v3 backbone architecture. Moreover, AG-CNN
outperforms the baseline DenseNet-121 model, achieving an 8.1% AUROC gain.
While previous research has mostly focused on finding PE in the main arteries,
our use of cutting-edge object detection models and ensembling techniques
greatly improves the accuracy of detecting small embolisms in the peripheral
arteries. Finally, our proposed classifier-guided detection approach further
refines the detection metrics, contributing new state-of-the-art to the
community: mAP$_{50}$, sensitivity, and F1-score of 0.846, 0.901, and 0.779,
respectively, outperforming the former benchmark with a significant 3.7%
improvement in mAP$_{50}$. Our research aims to elevate PE patient care by
integrating AI solutions into clinical workflows, highlighting the potential of
human-AI collaboration in medical diagnostics.
Related papers
- Integrating Deep Feature Extraction and Hybrid ResNet-DenseNet Model for Multi-Class Abnormality Detection in Endoscopic Images [0.9374652839580183]
The aim is to automate the identification of ten GI abnormality classes, including angioectasia, bleeding, and ulcers.
The proposed model achieves an overall accuracy of 94% across a well-structured dataset.
arXiv Detail & Related papers (2024-10-24T06:10:31Z) - Efficient Quality Control of Whole Slide Pathology Images with Human-in-the-loop Training [3.2646075700744928]
Histo whole slide images (WSIs) are being widely used to develop deep learning-based diagnostic solutions, especially for precision oncology.
Most of these diagnostic softwares are vulnerable to biases and impurities in the training and test data which can lead to inaccurate diagnoses.
We introduce HistoROI, a robust yet lightweight deep learning-based classifier to segregate WSI into six broad tissue regions.
arXiv Detail & Related papers (2024-09-29T07:08:45Z) - Polar-Net: A Clinical-Friendly Model for Alzheimer's Disease Detection
in OCTA Images [53.235117594102675]
Optical Coherence Tomography Angiography is a promising tool for detecting Alzheimer's disease (AD) by imaging the retinal microvasculature.
We propose a novel deep-learning framework called Polar-Net to provide interpretable results and leverage clinical prior knowledge.
We show that Polar-Net outperforms existing state-of-the-art methods and provides more valuable pathological evidence for the association between retinal vascular changes and AD.
arXiv Detail & Related papers (2023-11-10T11:49:49Z) - Learning to diagnose cirrhosis from radiological and histological labels
with joint self and weakly-supervised pretraining strategies [62.840338941861134]
We propose to leverage transfer learning from large datasets annotated by radiologists, to predict the histological score available on a small annex dataset.
We compare different pretraining methods, namely weakly-supervised and self-supervised ones, to improve the prediction of the cirrhosis.
This method outperforms the baseline classification of the METAVIR score, reaching an AUC of 0.84 and a balanced accuracy of 0.75.
arXiv Detail & Related papers (2023-02-16T17:06:23Z) - Deep Learning-Based Automatic Diagnosis System for Developmental
Dysplasia of the Hip [5.673030999857323]
This study proposes a deep learning-based system that automatically detects 14 keypoints from a radiograph.
It measures three anatomical angles (center-edge, T"onnis, and Sharp angles), and classifies DDH hips as grades I-IV based on the Crowe criteria.
arXiv Detail & Related papers (2022-09-07T19:50:30Z) - EMT-NET: Efficient multitask network for computer-aided diagnosis of
breast cancer [58.720142291102135]
We propose an efficient and light-weighted learning architecture to classify and segment breast tumors simultaneously.
We incorporate a segmentation task into a tumor classification network, which makes the backbone network learn representations focused on tumor regions.
The accuracy, sensitivity, and specificity of tumor classification is 88.6%, 94.1%, and 85.3%, respectively.
arXiv Detail & Related papers (2022-01-13T05:24:40Z) - Lung Cancer Lesion Detection in Histopathology Images Using Graph-Based
Sparse PCA Network [93.22587316229954]
We propose a graph-based sparse principal component analysis (GS-PCA) network, for automated detection of cancerous lesions on histological lung slides stained by hematoxylin and eosin (H&E)
We evaluate the performance of the proposed algorithm on H&E slides obtained from an SVM K-rasG12D lung cancer mouse model using precision/recall rates, F-score, Tanimoto coefficient, and area under the curve (AUC) of the receiver operator characteristic (ROC)
arXiv Detail & Related papers (2021-10-27T19:28:36Z) - Systematic Clinical Evaluation of A Deep Learning Method for Medical
Image Segmentation: Radiosurgery Application [48.89674088331313]
We systematically evaluate a Deep Learning (DL) method in a 3D medical image segmentation task.
Our method is integrated into the radiosurgery treatment process and directly impacts the clinical workflow.
arXiv Detail & Related papers (2021-08-21T16:15:40Z) - Pulmonary embolism identification in computerized tomography pulmonary
angiography scans with deep learning technologies in COVID-19 patients [0.65756807269289]
We present some of the most accurate and fast deep learning models for pulmonary embolism identification inA-Scans images, through classification and localization (object detection) approaches for patients infected by COVID-19.
We provide a fast-track solution (system) for the research community of the area, which combines both classification and object detection models for improving the precision of identifying pulmonary embolisms.
arXiv Detail & Related papers (2021-05-24T10:23:21Z) - Encoding Clinical Priori in 3D Convolutional Neural Networks for
Prostate Cancer Detection in bpMRI [1.0312968200748118]
We introduce a probabilistic population prior which captures the spatial prevalence and zonal distinction of clinically significant prostate cancer (csPCa)
We train 3D adaptations of the U-Net, U-SEResNet, UNet++ and Attention U-Net using 800 institutional training-validation scans, paired with radiologically-estimated annotations and our computed prior.
For 200 independent testing bpMRI scans with histologically-confirmed delineations of csPCa, our proposed method of encoding clinical priori demonstrates a strong ability to improve patient-based diagnosis.
arXiv Detail & Related papers (2020-10-31T13:10:58Z) - A Global Benchmark of Algorithms for Segmenting Late Gadolinium-Enhanced
Cardiac Magnetic Resonance Imaging [90.29017019187282]
" 2018 Left Atrium Challenge" using 154 3D LGE-MRIs, currently the world's largest cardiac LGE-MRI dataset.
Analyse of the submitted algorithms using technical and biological metrics was performed.
Results show the top method achieved a dice score of 93.2% and a mean surface to a surface distance of 0.7 mm.
arXiv Detail & Related papers (2020-04-26T08:49:17Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.