Interpretable Vital Sign Forecasting with Model Agnostic Attention Maps
- URL: http://arxiv.org/abs/2405.01714v3
- Date: Tue, 21 May 2024 21:02:59 GMT
- Title: Interpretable Vital Sign Forecasting with Model Agnostic Attention Maps
- Authors: Yuwei Liu, Chen Dan, Anubhav Bhatti, Bingjie Shen, Divij Gupta, Suraj Parmar, San Lee,
- Abstract summary: This paper introduces a framework that combines a deep learning model with an attention mechanism that highlights the critical time steps in the forecasting process.
We show that the attention mechanism could be adapted to various black box time series forecasting models such as N-HiTS and N-BEATS.
- Score: 5.354055742467353
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: Sepsis is a leading cause of mortality in intensive care units (ICUs), representing a substantial medical challenge. The complexity of analyzing diverse vital signs to predict sepsis further aggravates this issue. While deep learning techniques have been advanced for early sepsis prediction, their 'black-box' nature obscures the internal logic, impairing interpretability in critical settings like ICUs. This paper introduces a framework that combines a deep learning model with an attention mechanism that highlights the critical time steps in the forecasting process, thus improving model interpretability and supporting clinical decision-making. We show that the attention mechanism could be adapted to various black box time series forecasting models such as N-HiTS and N-BEATS. Our method preserves the accuracy of conventional deep learning models while enhancing interpretability through attention-weight-generated heatmaps. We evaluated our model on the eICU-CRD dataset, focusing on forecasting vital signs for sepsis patients. We assessed its performance using mean squared error (MSE) and dynamic time warping (DTW) metrics. We explored the attention maps of N-HiTS and N-BEATS, examining the differences in their performance and identifying crucial factors influencing vital sign forecasting.
Related papers
- SurvCORN: Survival Analysis with Conditional Ordinal Ranking Neural Network [4.772480981435387]
We propose SurvCORN, a novel method utilizing conditional ordinal ranking networks to predict survival curves directly.
We also introduce SurvMAE, a metric designed to evaluate the accuracy of model predictions in estimating time-to-event outcomes.
arXiv Detail & Related papers (2024-09-30T03:01:25Z) - Deep State-Space Generative Model For Correlated Time-to-Event Predictions [54.3637600983898]
We propose a deep latent state-space generative model to capture the interactions among different types of correlated clinical events.
Our method also uncovers meaningful insights about the latent correlations among mortality and different types of organ failures.
arXiv Detail & Related papers (2024-07-28T02:42:36Z) - SepsisLab: Early Sepsis Prediction with Uncertainty Quantification and Active Sensing [67.8991481023825]
Sepsis is the leading cause of in-hospital mortality in the USA.
Existing predictive models are usually trained on high-quality data with few missing information.
For the potential high-risk patients with low confidence due to limited observations, we propose a robust active sensing algorithm.
arXiv Detail & Related papers (2024-07-24T04:47:36Z) - Evaluating the Fairness of the MIMIC-IV Dataset and a Baseline
Algorithm: Application to the ICU Length of Stay Prediction [65.268245109828]
This paper uses the MIMIC-IV dataset to examine the fairness and bias in an XGBoost binary classification model predicting the ICU length of stay.
The research reveals class imbalances in the dataset across demographic attributes and employs data preprocessing and feature extraction.
The paper concludes with recommendations for fairness-aware machine learning techniques for mitigating biases and the need for collaborative efforts among healthcare professionals and data scientists.
arXiv Detail & Related papers (2023-12-31T16:01:48Z) - Vital Sign Forecasting for Sepsis Patients in ICUs [5.543372375499915]
This paper uses state-of-the-art deep learning (DL) architectures to introduce a multi-step forecasting system.
We introduce a DL-based vital sign forecasting system that predicts up to 3 hours of future vital signs from 6 hours of past data.
We evaluate the performance of our models using mean squared error (MSE) and dynamic time warping (DTW) metrics.
arXiv Detail & Related papers (2023-11-08T15:47:58Z) - MedDiffusion: Boosting Health Risk Prediction via Diffusion-based Data
Augmentation [58.93221876843639]
This paper introduces a novel, end-to-end diffusion-based risk prediction model, named MedDiffusion.
It enhances risk prediction performance by creating synthetic patient data during training to enlarge sample space.
It discerns hidden relationships between patient visits using a step-wise attention mechanism, enabling the model to automatically retain the most vital information for generating high-quality data.
arXiv Detail & Related papers (2023-10-04T01:36:30Z) - Hypergraph Convolutional Networks for Fine-grained ICU Patient
Similarity Analysis and Risk Prediction [15.06049250330114]
The Intensive Care Unit (ICU) is one of the most important parts of a hospital, which admits critically ill patients and provides continuous monitoring and treatment.
Various patient outcome prediction methods have been attempted to assist healthcare professionals in clinical decision-making.
arXiv Detail & Related papers (2023-08-24T05:26:56Z) - ALRt: An Active Learning Framework for Irregularly Sampled Temporal Data [1.370633147306388]
Sepsis is a deadly condition affecting many patients in the hospital.
We propose the use of Active Learning Recurrent Neural Networks (ALRts) for short temporal horizons to improve the prediction of irregularly sampled temporal events such as sepsis.
We show that an active learning RNN model trained on limited data can form robust sepsis predictions comparable to models using the entire training dataset.
arXiv Detail & Related papers (2022-12-13T04:31:49Z) - Sepsis Prediction with Temporal Convolutional Networks [6.161443205488337]
Our model is trained on data extracted from MIMIC III database.
Benchmarked with several machine learning models, our model is superior on this binary classification task.
arXiv Detail & Related papers (2022-05-31T01:14:38Z) - When in Doubt: Neural Non-Parametric Uncertainty Quantification for
Epidemic Forecasting [70.54920804222031]
Most existing forecasting models disregard uncertainty quantification, resulting in mis-calibrated predictions.
Recent works in deep neural models for uncertainty-aware time-series forecasting also have several limitations.
We model the forecasting task as a probabilistic generative process and propose a functional neural process model called EPIFNP.
arXiv Detail & Related papers (2021-06-07T18:31:47Z) - STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological
Regularization [76.57716281104938]
We develop a tensor method to predict the evolution of epidemic trends for many regions simultaneously.
STELAR enables long-term prediction by incorporating latent temporal regularization through a system of discrete-time difference equations.
We conduct experiments using both county- and state-level COVID-19 data and show that our model can identify interesting latent patterns of the epidemic.
arXiv Detail & Related papers (2020-12-08T21:21:47Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.