landmarker: a Toolkit for Anatomical Landmark Localization in 2D/3D Images
- URL: http://arxiv.org/abs/2501.10098v1
- Date: Fri, 17 Jan 2025 10:35:58 GMT
- Title: landmarker: a Toolkit for Anatomical Landmark Localization in 2D/3D Images
- Authors: Jef Jonkers, Luc Duchateau, Glenn Van Wallendael, Sofie Van Hoecke,
- Abstract summary: landmarker is a Python package for developing and evaluating landmark localization algorithms.<n> landmarker enhances the accuracy of landmark identification, streamlines research and development processes, and supports various image formats and preprocessing pipelines.<n>Landmark addresses a critical need for precision and customization in landmark localization tasks not adequately met by existing general-purpose pose estimation tools.
- Score: 2.9310590399782788
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Anatomical landmark localization in 2D/3D images is a critical task in medical imaging. Although many general-purpose tools exist for landmark localization in classical computer vision tasks, such as pose estimation, they lack the specialized features and modularity necessary for anatomical landmark localization applications in the medical domain. Therefore, we introduce landmarker, a Python package built on PyTorch. The package provides a comprehensive, flexible toolkit for developing and evaluating landmark localization algorithms, supporting a range of methodologies, including static and adaptive heatmap regression. landmarker enhances the accuracy of landmark identification, streamlines research and development processes, and supports various image formats and preprocessing pipelines. Its modular design allows users to customize and extend the toolkit for specific datasets and applications, accelerating innovation in medical imaging. landmarker addresses a critical need for precision and customization in landmark localization tasks not adequately met by existing general-purpose pose estimation tools.
Related papers
- nnLandmark: A Self-Configuring Method for 3D Medical Landmark Detection [35.41030755599218]
This work introduces nnLandmark, a self-configuring deep learning framework for 3D medical landmark detection.
nnLandmark eliminates the need for manual parameter tuning, offering out-of-the-box usability.
It achieves state-of-the-art accuracy across two public datasets, with a radial mean error (MRE) of 1.5 mm on the Mandibular Molar Landmark (MML) dental CT dataset and 1.2 mm for anatomical fiducials on a brain MRI dataset (AFIDs)
nnLandmark establishes a reliable baseline for 3D landmark detection, supporting research in anatomical localization and
arXiv Detail & Related papers (2025-04-09T09:53:39Z) - FaceDig: Automated tool for placing landmarks on facial portraits for geometric morphometrics users [0.0]
FaceDig is an AI-powered tool designed to automate landmark placement with human-level precision.
It was trained using one of the largest and most ethnically diverse face datasets.
Our results demonstrate that FaceDig provides reliable landmark coordinates, comparable to those placed manually by experts.
arXiv Detail & Related papers (2024-11-03T10:03:52Z) - DETR Doesn't Need Multi-Scale or Locality Design [69.56292005230185]
This paper presents an improved DETR detector that maintains a "plain" nature.
It uses a single-scale feature map and global cross-attention calculations without specific locality constraints.
We show that two simple technologies are surprisingly effective within a plain design to compensate for the lack of multi-scale feature maps and locality constraints.
arXiv Detail & Related papers (2023-08-03T17:59:04Z) - Multi-View Vertebra Localization and Identification from CT Images [57.56509107412658]
We propose a multi-view vertebra localization and identification from CT images.
We convert the 3D problem into a 2D localization and identification task on different views.
Our method can learn the multi-view global information naturally.
arXiv Detail & Related papers (2023-07-24T14:43:07Z) - Localizing Anatomical Landmarks in Ocular Images using Zoom-In Attentive
Networks [34.05575237813503]
We propose a zoom-in attentive network (ZIAN) for anatomical landmark localization in ocular images.
Experiments show that ZIAN achieves promising performances and outperforms state-of-the-art localization methods.
arXiv Detail & Related papers (2022-09-25T15:08:20Z) - Attentive Symmetric Autoencoder for Brain MRI Segmentation [56.02577247523737]
We propose a novel Attentive Symmetric Auto-encoder based on Vision Transformer (ViT) for 3D brain MRI segmentation tasks.
In the pre-training stage, the proposed auto-encoder pays more attention to reconstruct the informative patches according to the gradient metrics.
Experimental results show that our proposed attentive symmetric auto-encoder outperforms the state-of-the-art self-supervised learning methods and medical image segmentation models.
arXiv Detail & Related papers (2022-09-19T09:43:19Z) - MeshLoc: Mesh-Based Visual Localization [54.731309449883284]
We explore a more flexible alternative based on dense 3D meshes that does not require features matching between database images to build the scene representation.
Surprisingly competitive results can be obtained when extracting features on renderings of these meshes, without any neural rendering stage.
Our results show that dense 3D model-based representations are a promising alternative to existing representations and point to interesting and challenging directions for future research.
arXiv Detail & Related papers (2022-07-21T21:21:10Z) - Semantic Image Alignment for Vehicle Localization [111.59616433224662]
We present a novel approach to vehicle localization in dense semantic maps using semantic segmentation from a monocular camera.
In contrast to existing visual localization approaches, the system does not require additional keypoint features, handcrafted localization landmark extractors or expensive LiDAR sensors.
arXiv Detail & Related papers (2021-10-08T14:40:15Z) - Learn Fine-grained Adaptive Loss for Multiple Anatomical Landmark
Detection in Medical Images [15.7026400415269]
We propose a novel learning-to-learn framework for landmark detection.
Our proposed framework is general and shows the potential to improve the efficiency of anatomical landmark detection.
arXiv Detail & Related papers (2021-05-19T13:39:18Z) - One-Shot Object Localization in Medical Images based on Relative
Position Regression [17.251097303541002]
We present a one-shot framework for organ and landmark localization in volumetric medical images.
Our main idea comes from that tissues and organs from different human bodies have a similar relative position and context.
Experiments on multi-organ localization from head-and-neck (HaN) CT volumes showed that our method acquired competitive performance in real time.
arXiv Detail & Related papers (2020-12-13T11:54:19Z) - Self-Supervised Discovery of Anatomical Shape Landmarks [5.693003993674883]
We propose a self-supervised, neural network approach for automatically positioning and detecting landmarks in images that can be used for subsequent analysis.
We present a complete framework, which only takes a set of input images and produces landmarks that are immediately usable for statistical shape analysis.
arXiv Detail & Related papers (2020-06-13T00:56:33Z) - Structured Landmark Detection via Topology-Adapting Deep Graph Learning [75.20602712947016]
We present a new topology-adapting deep graph learning approach for accurate anatomical facial and medical landmark detection.
The proposed method constructs graph signals leveraging both local image features and global shape features.
Experiments are conducted on three public facial image datasets (WFLW, 300W, and COFW-68) as well as three real-world X-ray medical datasets (Cephalometric (public), Hand and Pelvis)
arXiv Detail & Related papers (2020-04-17T11:55:03Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.