Physics-Informed autoencoder for DSC-MRI Perfusion post-processing: application to glioma grading
- URL: http://arxiv.org/abs/2510.13886v1
- Date: Tue, 14 Oct 2025 02:39:55 GMT
- Title: Physics-Informed autoencoder for DSC-MRI Perfusion post-processing: application to glioma grading
- Authors: Pierre Fayolle, Alexandre Bône, Noëlie Debs, Mathieu Naudin, Pascal Bourdon, Remy Guillevin, David Helbert,
- Abstract summary: We propose a physics-informed autoencoder for DSC-MRI perfusion analysis.<n>Our method shows reliable results for glioma grading in accordance with other well-known deconvolution algorithms.
- Score: 34.54259298603826
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: DSC-MRI perfusion is a medical imaging technique for diagnosing and prognosing brain tumors and strokes. Its analysis relies on mathematical deconvolution, but noise or motion artifacts in a clinical environment can disrupt this process, leading to incorrect estimate of perfusion parameters. Although deep learning approaches have shown promising results, their calibration typically rely on third-party deconvolution algorithms to generate reference outputs and are bound to reproduce their limitations. To adress this problem, we propose a physics-informed autoencoder that leverages an analytical model to decode the perfusion parameters and guide the learning of the encoding network. This autoencoder is trained in a self-supervised fashion without any third-party software and its performance is evaluated on a database with glioma patients. Our method shows reliable results for glioma grading in accordance with other well-known deconvolution algorithms despite a lower computation time. It also achieved competitive performance even in the presence of high noise which is critical in a medical environment.
Related papers
- AI-Enhanced Virtual Biopsies for Brain Tumor Diagnosis in Low Resource Settings [0.0]
This paper presents a prototype virtual biopsy pipeline for four-class classification of 2D brain MRI images using a lightweight convolutional neural network (CNN) and radiomics-style handcrafted features.<n>The system is framed as decision support and not a substitute for clinical diagnosis or histopathology.
arXiv Detail & Related papers (2025-12-19T19:53:56Z) - Leveraging Quantum-Based Architectures for Robust Diagnostics [0.0]
The objective of this study is to diagnose and differentiate kidney stones, cysts, and tumors using Computed Tomography (CT) images of the kidney.<n>We combine a pretrained ResNet50 encoder, with a Quantum Convolutional Neural Network (QCNN) to explore quantum-assisted diagnosis.
arXiv Detail & Related papers (2025-11-15T23:36:58Z) - Adapting HFMCA to Graph Data: Self-Supervised Learning for Generalizable fMRI Representations [57.054499278843856]
Functional magnetic resonance imaging (fMRI) analysis faces significant challenges due to limited dataset sizes and domain variability between studies.<n>Traditional self-supervised learning methods inspired by computer vision often rely on positive and negative sample pairs.<n>We propose adapting a recently developed Hierarchical Functional Maximal Correlation Algorithm (HFMCA) to graph-structured fMRI data.
arXiv Detail & Related papers (2025-10-05T12:35:01Z) - Non-Intrusive Parametrized-Background Data-Weak Reconstruction of Cardiac Displacement Fields from Sparse MRI-like Observations [0.0]
We apply the non-intrusive Parametrized Data-Weak (PBDW) approach to 3D cardiac displacement reconstruction from limited MRI-like observations.<n>Our implementation requires only solution snapshots -- no governing equations, assembly routines, or solver access.<n>We demonstrate the effectiveness of the method through validation on a 3D left ventricular model with simulated scar tissue.
arXiv Detail & Related papers (2025-09-18T11:10:24Z) - A Unified Model for Compressed Sensing MRI Across Undersampling Patterns [69.19631302047569]
We propose a unified MRI reconstruction model robust to various measurement undersampling patterns and image resolutions.<n>Our model improves SSIM by 11% and PSNR by 4 dB over a state-of-the-art CNN (End-to-End VarNet) with 600$times$ faster inference than diffusion methods.
arXiv Detail & Related papers (2024-10-05T20:03:57Z) - Fairness-Aware Data Augmentation for Cardiac MRI using Text-Conditioned Diffusion Models [1.6581402323174208]
We propose a method to alleviate imbalances inherent in datasets through the generation of synthetic data.<n>We adopt ControlNet based on a denoising diffusion probabilistic model to condition on text assembled from patient metadata and cardiac geometry.<n>Our experiments demonstrate the effectiveness of the proposed approach in mitigating dataset imbalances.
arXiv Detail & Related papers (2024-03-28T15:41:43Z) - PINQI: An End-to-End Physics-Informed Approach to Learned Quantitative MRI Reconstruction [0.7199733380797579]
Quantitative Magnetic Resonance Imaging (qMRI) enables the reproducible measurement of biophysical parameters in tissue.
The challenge lies in solving a nonlinear, ill-posed inverse problem to obtain desired tissue parameter maps from acquired raw data.
We propose PINQI, a novel qMRI reconstruction method that integrates the knowledge about the signal, acquisition model, and learned regularization into a single end-to-end trainable neural network.
arXiv Detail & Related papers (2023-06-19T15:37:53Z) - Convolutional Neural Generative Coding: Scaling Predictive Coding to
Natural Images [79.07468367923619]
We develop convolutional neural generative coding (Conv-NGC)
We implement a flexible neurobiologically-motivated algorithm that progressively refines latent state maps.
We study the effectiveness of our brain-inspired neural system on the tasks of reconstruction and image denoising.
arXiv Detail & Related papers (2022-11-22T06:42:41Z) - Preservation of High Frequency Content for Deep Learning-Based Medical
Image Classification [74.84221280249876]
An efficient analysis of large amounts of chest radiographs can aid physicians and radiologists.
We propose a novel Discrete Wavelet Transform (DWT)-based method for the efficient identification and encoding of visual information.
arXiv Detail & Related papers (2022-05-08T15:29:54Z) - Ultrasound Signal Processing: From Models to Deep Learning [64.56774869055826]
Medical ultrasound imaging relies heavily on high-quality signal processing to provide reliable and interpretable image reconstructions.
Deep learning based methods, which are optimized in a data-driven fashion, have gained popularity.
A relatively new paradigm combines the power of the two: leveraging data-driven deep learning, as well as exploiting domain knowledge.
arXiv Detail & Related papers (2022-04-09T13:04:36Z) - Data and Physics Driven Learning Models for Fast MRI -- Fundamentals and
Methodologies from CNN, GAN to Attention and Transformers [72.047680167969]
This article aims to introduce the deep learning based data driven techniques for fast MRI including convolutional neural network and generative adversarial network based methods.
We will detail the research in coupling physics and data driven models for MRI acceleration.
Finally, we will demonstrate through a few clinical applications, explain the importance of data harmonisation and explainable models for such fast MRI techniques in multicentre and multi-scanner studies.
arXiv Detail & Related papers (2022-04-01T22:48:08Z) - Hybrid Deep Learning Gaussian Process for Diabetic Retinopathy Diagnosis
and Uncertainty Quantification [0.0]
Diabetic Retinopathy (DR) is one of the microvascular complications of Diabetes Mellitus, which remains one of the leading causes of blindness worldwide.
Computational models based on Conal Neural Networks represent the state of the art for the automatic detection of DR using eye fundus images.
In this paper, a hybrid Deep Learning-Gaussian process method for DR diagnosis and uncertainty quantification is presented.
arXiv Detail & Related papers (2020-07-29T04:10:42Z) - Improved Slice-wise Tumour Detection in Brain MRIs by Computing
Dissimilarities between Latent Representations [68.8204255655161]
Anomaly detection for Magnetic Resonance Images (MRIs) can be solved with unsupervised methods.
We have proposed a slice-wise semi-supervised method for tumour detection based on the computation of a dissimilarity function in the latent space of a Variational AutoEncoder.
We show that by training the models on higher resolution images and by improving the quality of the reconstructions, we obtain results which are comparable with different baselines.
arXiv Detail & Related papers (2020-07-24T14:02:09Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.