Hybrid Deep Learning Gaussian Process for Diabetic Retinopathy Diagnosis
and Uncertainty Quantification
- URL: http://arxiv.org/abs/2007.14994v1
- Date: Wed, 29 Jul 2020 04:10:42 GMT
- Title: Hybrid Deep Learning Gaussian Process for Diabetic Retinopathy Diagnosis
and Uncertainty Quantification
- Authors: Santiago Toledo-Cort\'es, Melissa De La Pava, Oscar Perd\'omo, and
Fabio A. Gonz\'alez
- Abstract summary: Diabetic Retinopathy (DR) is one of the microvascular complications of Diabetes Mellitus, which remains one of the leading causes of blindness worldwide.
Computational models based on Conal Neural Networks represent the state of the art for the automatic detection of DR using eye fundus images.
In this paper, a hybrid Deep Learning-Gaussian process method for DR diagnosis and uncertainty quantification is presented.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Diabetic Retinopathy (DR) is one of the microvascular complications of
Diabetes Mellitus, which remains as one of the leading causes of blindness
worldwide. Computational models based on Convolutional Neural Networks
represent the state of the art for the automatic detection of DR using eye
fundus images. Most of the current work address this problem as a binary
classification task. However, including the grade estimation and quantification
of predictions uncertainty can potentially increase the robustness of the
model. In this paper, a hybrid Deep Learning-Gaussian process method for DR
diagnosis and uncertainty quantification is presented. This method combines the
representational power of deep learning, with the ability to generalize from
small datasets of Gaussian process models. The results show that uncertainty
quantification in the predictions improves the interpretability of the method
as a diagnostic support tool. The source code to replicate the experiments is
publicly available at https://github.com/stoledoc/DLGP-DR-Diagnosis.
Related papers
- DDxT: Deep Generative Transformer Models for Differential Diagnosis [51.25660111437394]
We show that a generative approach trained with simpler supervised and self-supervised learning signals can achieve superior results on the current benchmark.
The proposed Transformer-based generative network, named DDxT, autoregressively produces a set of possible pathologies, i.e., DDx, and predicts the actual pathology using a neural network.
arXiv Detail & Related papers (2023-12-02T22:57:25Z) - Generalizing to Unseen Domains in Diabetic Retinopathy Classification [8.59772105902647]
We study the problem of generalizing a model to unseen distributions or domains in diabetic retinopathy classification.
We propose a simple and effective domain generalization (DG) approach that achieves self-distillation in vision transformers.
We report the performance of several state-of-the-art DG methods on open-source DR classification datasets.
arXiv Detail & Related papers (2023-10-26T09:11:55Z) - StRegA: Unsupervised Anomaly Detection in Brain MRIs using a Compact
Context-encoding Variational Autoencoder [48.2010192865749]
Unsupervised anomaly detection (UAD) can learn a data distribution from an unlabelled dataset of healthy subjects and then be applied to detect out of distribution samples.
This research proposes a compact version of the "context-encoding" VAE (ceVAE) model, combined with pre and post-processing steps, creating a UAD pipeline (StRegA)
The proposed pipeline achieved a Dice score of 0.642$pm$0.101 while detecting tumours in T2w images of the BraTS dataset and 0.859$pm$0.112 while detecting artificially induced anomalies.
arXiv Detail & Related papers (2022-01-31T14:27:35Z) - Blindness (Diabetic Retinopathy) Severity Scale Detection [0.0]
Diabetic retinopathy (DR) is a severe complication of diabetes that can cause permanent blindness.
Timely diagnosis and treatment of DR are critical to avoid total loss of vision.
We propose a novel deep learning based method for automatic screening of retinal fundus images.
arXiv Detail & Related papers (2021-10-04T11:31:15Z) - FEDI: Few-shot learning based on Earth Mover's Distance algorithm
combined with deep residual network to identify diabetic retinopathy [3.6623193507510012]
This paper proposes a few-shot learning model of a deep residual network based on Earth Mover's algorithm to assist in diagnosing diabetic retinopathy.
We build training and validation classification tasks for few-shot learning based on 39 categories of 1000 sample data, train deep residual networks, and obtain experience pre-training models.
Based on the weights of the pre-trained model, the Earth Mover's Distance algorithm calculates the distance between the images, obtains the similarity between the images, and changes the model's parameters to improve the accuracy of the training model.
arXiv Detail & Related papers (2021-08-22T13:05:02Z) - About Explicit Variance Minimization: Training Neural Networks for
Medical Imaging With Limited Data Annotations [2.3204178451683264]
Variance Aware Training (VAT) method exploits this property by introducing the variance error into the model loss function.
We validate VAT on three medical imaging datasets from diverse domains and various learning objectives.
arXiv Detail & Related papers (2021-05-28T21:34:04Z) - Many-to-One Distribution Learning and K-Nearest Neighbor Smoothing for
Thoracic Disease Identification [83.6017225363714]
deep learning has become the most powerful computer-aided diagnosis technology for improving disease identification performance.
For chest X-ray imaging, annotating large-scale data requires professional domain knowledge and is time-consuming.
In this paper, we propose many-to-one distribution learning (MODL) and K-nearest neighbor smoothing (KNNS) methods to improve a single model's disease identification performance.
arXiv Detail & Related papers (2021-02-26T02:29:30Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Learning Interpretable Microscopic Features of Tumor by Multi-task
Adversarial CNNs To Improve Generalization [1.7371375427784381]
Existing CNN models act as black boxes, not ensuring to the physicians that important diagnostic features are used by the model.
Here we show that our architecture, by learning end-to-end an uncertainty-based weighting combination of multi-task and adversarial losses, is encouraged to focus on pathology features.
Our results on breast lymph node tissue show significantly improved generalization in the detection of tumorous tissue, with best average AUC 0.89 (0.01) against the baseline AUC 0.86 (0.005)
arXiv Detail & Related papers (2020-08-04T12:10:35Z) - Improved Slice-wise Tumour Detection in Brain MRIs by Computing
Dissimilarities between Latent Representations [68.8204255655161]
Anomaly detection for Magnetic Resonance Images (MRIs) can be solved with unsupervised methods.
We have proposed a slice-wise semi-supervised method for tumour detection based on the computation of a dissimilarity function in the latent space of a Variational AutoEncoder.
We show that by training the models on higher resolution images and by improving the quality of the reconstructions, we obtain results which are comparable with different baselines.
arXiv Detail & Related papers (2020-07-24T14:02:09Z) - Stochasticity in Neural ODEs: An Empirical Study [68.8204255655161]
Regularization of neural networks (e.g. dropout) is a widespread technique in deep learning that allows for better generalization.
We show that data augmentation during the training improves the performance of both deterministic and versions of the same model.
However, the improvements obtained by the data augmentation completely eliminate the empirical regularization gains, making the performance of neural ODE and neural SDE negligible.
arXiv Detail & Related papers (2020-02-22T22:12:56Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.