Multiscale Cross-Modal Mapping of Molecular, Pathologic, and Radiologic Phenotypes in Lipid-Deficient Clear Cell Renal CellCarcinoma
- URL: http://arxiv.org/abs/2512.14750v1
- Date: Sat, 13 Dec 2025 23:49:41 GMT
- Title: Multiscale Cross-Modal Mapping of Molecular, Pathologic, and Radiologic Phenotypes in Lipid-Deficient Clear Cell Renal CellCarcinoma
- Authors: Ying Cui, Dongzhe Zheng, Ke Yu, Xiyin Zheng, Xiaorui Wang, Xinxiang Li, Yan Gu, Lin Fu, Xinyi Chen, Wenjie Mei, Xin-Gui Peng,
- Abstract summary: The lipid-deficient de-clear cell differentiated (DCCD) ccRCC subtype is associated with adverse outcomes even in early-stage disease.<n>Here, we establish a hierarchical cross-scale framework for the preoperative identification of DCCD-ccRCC.<n>PathoDCCD captured multi-scale microscopic features, from cellular morphology and tissue architecture to meso-regional organization.<n>RadioDCCD integrated complementary macroscopic information by combining whole-tumor and its habitat-subregions radiomics.
- Score: 20.5770391049623
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Clear cell renal cell carcinoma (ccRCC) exhibits extensive intratumoral heterogeneity on multiple biological scales, contributing to variable clinical outcomes and limiting the effectiveness of conventional TNM staging, which highlights the urgent need for multiscale integrative analytic frameworks. The lipid-deficient de-clear cell differentiated (DCCD) ccRCC subtype, defined by multi-omics analyses, is associated with adverse outcomes even in early-stage disease. Here, we establish a hierarchical cross-scale framework for the preoperative identification of DCCD-ccRCC. At the highest layer, cross-modal mapping transferred molecular signatures to histological and CT phenotypes, establishing a molecular-to-pathology-to-radiology supervisory bridge. Within this framework, each modality-specific model is designed to mirror the inherent hierarchical structure of tumor biology. PathoDCCD captured multi-scale microscopic features, from cellular morphology and tissue architecture to meso-regional organization. RadioDCCD integrated complementary macroscopic information by combining whole-tumor and its habitat-subregions radiomics with a 2D maximal-section heterogeneity metric. These nested models enabled integrated molecular subtype prediction and clinical risk stratification. Across five cohorts totaling 1,659 patients, PathoDCCD reliably recapitulated molecular subtypes, while RadioDCCD provided reliable preoperative prediction. The consistent predictions identified patients with the poorest clinical outcomes. This cross-scale paradigm unifies molecular biology, computational pathology, and quantitative radiology into a biologically grounded strategy for preoperative noninvasive molecular phenotyping of ccRCC.
Related papers
- R-GenIMA: Integrating Neuroimaging and Genetics with Interpretable Multimodal AI for Alzheimer's Disease Progression [63.97617759805451]
Early detection of Alzheimer's disease requires models capable of integrating macro-scale neuroanatomical alterations with micro-scale genetic susceptibility.<n>We introduce R-GenIMA, an interpretable multimodal large language model that couples a novel ROI-wise vision transformer with genetic prompting.<n>R-GenIMA achieves state-of-the-art performance in four-way classification across normal cognition, subjective memory concerns, mild cognitive impairment, and AD.
arXiv Detail & Related papers (2025-12-22T02:54:10Z) - Deep Pathomic Learning Defines Prognostic Subtypes and Molecular Drivers in Colorectal Cancer [16.930050030905782]
The TDAM-CRC predictive performance significantly outperformed the conventional clinical staging system and multiple state-of-the-art models.<n>The TDAM-CRC risk score was confirmed as an independent prognostic factor in multivariable analysis.<n>We identified and validated Mitochondrial Ribosomal Protein L37 (MRPL37) as a key hub gene linking deep pathomic features to clinical prognosis.
arXiv Detail & Related papers (2025-11-19T03:19:43Z) - A Hierarchical Geometry-guided Transformer for Histological Subtyping of Primary Liver Cancer [9.468531938157998]
Liver cancer is the most heterogeneous and prognostically diverse cancers of the digestive system.<n>The representation of features in Whole Slide Images (WSIs) encompasses crucial information for liver cancer histological subtyping.<n>ARGUS is proposed to advance histological subtyping in liver cancer by capturing the macro-meso-micro hierarchical information within the TME.
arXiv Detail & Related papers (2025-10-07T08:10:18Z) - LGE-Guided Cross-Modality Contrastive Learning for Gadolinium-Free Cardiomyopathy Screening in Cine CMR [51.11296719862485]
We propose a Contrastive Learning and Cross-Modal alignment framework for gadolinium-free cardiomyopathy screening using cine CMR sequences.<n>By aligning the latent spaces of cine CMR and Late Gadolinium Enhancement (LGE) sequences, our model encodes fibrosis-specific pathology into cine CMR embeddings.
arXiv Detail & Related papers (2025-08-23T07:21:23Z) - Multimodal Sheaf-based Network for Glioblastoma Molecular Subtype Prediction [5.563171090433323]
We propose a novel framework for structure-aware and consistent fusion of MRI and histopathology data.<n>Our model outperforms baseline methods and demonstrates robustness in incomplete or missing data scenarios.
arXiv Detail & Related papers (2025-08-13T11:11:33Z) - PAST: A multimodal single-cell foundation model for histopathology and spatial transcriptomics in cancer [26.795192024462963]
PAST is a pan-cancer single-cell foundation model trained on 20 million paired histopathology images and single-cell transcriptomes.<n>It predicts single-cell gene expression, virtual molecular staining, and multimodal survival analysis directly from routine pathology slides.<n>Our work establishes a new paradigm for pathology foundation models, providing a versatile tool for high-resolution spatial omics, mechanistic discovery, and precision cancer research.
arXiv Detail & Related papers (2025-07-08T21:51:25Z) - MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention [57.044719143401664]
Histopathology and transcriptomics are fundamental modalities in oncology, encapsulating the morphological and molecular aspects of the disease.<n>We present MIRROR, a novel multi-modal representation learning method designed to foster both modality alignment and retention.<n>Extensive evaluations on TCGA cohorts for cancer subtyping and survival analysis highlight MIRROR's superior performance.
arXiv Detail & Related papers (2025-03-01T07:02:30Z) - Artificial-intelligence-based molecular classification of diffuse
gliomas using rapid, label-free optical imaging [59.79875531898648]
DeepGlioma is an artificial-intelligence-based diagnostic screening system.
DeepGlioma can predict the molecular alterations used by the World Health Organization to define the adult-type diffuse glioma taxonomy.
arXiv Detail & Related papers (2023-03-23T18:50:18Z) - G-MIND: An End-to-End Multimodal Imaging-Genetics Framework for
Biomarker Identification and Disease Classification [49.53651166356737]
We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers.
We have evaluated our model on a population study of schizophrenia that includes two functional MRI (fMRI) paradigms and Single Nucleotide Polymorphism (SNP) data.
arXiv Detail & Related papers (2021-01-27T19:28:04Z) - Co-Heterogeneous and Adaptive Segmentation from Multi-Source and
Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion
Segmentation [48.504790189796836]
We present a novel segmentation strategy, co-heterogenous and adaptive segmentation (CHASe)
We propose a versatile framework that fuses appearance based semi-supervision, mask based adversarial domain adaptation, and pseudo-labeling.
CHASe can further improve pathological liver mask Dice-Sorensen coefficients by ranges of $4.2% sim 9.4%$.
arXiv Detail & Related papers (2020-05-27T06:58:39Z) - Multi-Phase Cross-modal Learning for Noninvasive Gene Mutation
Prediction in Hepatocellular Carcinoma [7.621860963237023]
We propose an end-to-end deep learning framework for mutation prediction in APOB, COL11A1 and ATRX genes using multiphasic CT scans.
arXiv Detail & Related papers (2020-05-08T14:36:59Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.