PanCanBench: A Comprehensive Benchmark for Evaluating Large Language Models in Pancreatic Oncology

• URL: http://arxiv.org/abs/2603.01343v1
• Date: Mon, 02 Mar 2026 00:50:39 GMT
• Title: PanCanBench: A Comprehensive Benchmark for Evaluating Large Language Models in Pancreatic Oncology
• Authors: Yimin Zhao, Sheela R. Damle, Simone E. Dekker, Scott Geng, Karly Williams Silva, Jesse J Hubbard, Manuel F Fernandez, Fatima Zelada-Arenas, Alejandra Alvarez, Brianne Flores, Alexis Rodriguez, Stephen Salerno, Carrie Wright, Zihao Wang, Pang Wei Koh, Jeffrey T. Leek,
• Abstract summary: Large language models (LLMs) have achieved expert-level performance on standardized examinations, yet multiple-choice accuracy poorly reflects real-world clinical utility and safety.<n>We developed a human-in-the-loop pipeline to create expert rubrics for de-identified patient questions.<n>We evaluated 22 proprietary and open-source LLMs using an LLM-as-a-judge framework, measuring clinical completeness, factual accuracy, and web-search integration.
• Score: 48.732366302949515
• License: http://creativecommons.org/licenses/by/4.0/
• Abstract: Large language models (LLMs) have achieved expert-level performance on standardized examinations, yet multiple-choice accuracy poorly reflects real-world clinical utility and safety. As patients and clinicians increasingly use LLMs for guidance on complex conditions such as pancreatic cancer, evaluation must extend beyond general medical knowledge. Existing frameworks, such as HealthBench, rely on simulated queries and lack disease-specific depth. Moreover, high rubric-based scores do not ensure factual correctness, underscoring the need to assess hallucinations. We developed a human-in-the-loop pipeline to create expert rubrics for de-identified patient questions from the Pancreatic Cancer Action Network (PanCAN). The resulting benchmark, PanCanBench, includes 3,130 question-specific criteria across 282 authentic patient questions. We evaluated 22 proprietary and open-source LLMs using an LLM-as-a-judge framework, measuring clinical completeness, factual accuracy, and web-search integration. Models showed substantial variation in rubric-based completeness, with scores ranging from 46.5% to 82.3%. Factual errors were common, with hallucination rates (the percentages of responses containing at least one factual error) ranging from 6.0% for Gemini-2.5 Pro and GPT-4o to 53.8% for Llama-3.1-8B. Importantly, newer reasoning-optimized models did not consistently improve factuality: although o3 achieved the highest rubric score, it produced inaccuracies more frequently than other GPT-family models. Web-search integration did not inherently guarantee better responses. The average score changed from 66.8% to 63.9% for Gemini-2.5 Pro and from 73.8% to 72.8% for GPT-5 when web search was enabled. Synthetic AI-generated rubrics inflated absolute scores by 17.9 points on average while generally maintaining similar relative ranking.

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