An abstract model of nonrandom, non-Lamarckian mutation in evolution using a multivariate estimation-of-distribution algorithm
- URL: http://arxiv.org/abs/2604.12884v1
- Date: Tue, 14 Apr 2026 15:33:45 GMT
- Title: An abstract model of nonrandom, non-Lamarckian mutation in evolution using a multivariate estimation-of-distribution algorithm
- Abstract summary: We present a simulation model that demonstrates nonrandom, non-Lamarckian mutation concretely.<n>The model highlights the importance of incorporating internal integration of information through heritable change in both evolutionary theory and evolutionary computation.
- Score: 0.0
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: At the fundamental conceptual level, two alternatives have traditionally been considered for how mutations arise and how evolution happens: 1) random mutation and natural selection, and 2) Lamarckism. Recently, the theory of Interaction-based Evolution (IBE) has been proposed, according to which mutations are neither random nor Lamarckian, but are influenced by information accumulating internally in the genome over generations. Based on the estimation-of-distribution algorithms framework, we present a simulation model that demonstrates nonrandom, non-Lamarckian mutation concretely while capturing indirectly several aspects of IBE: selection, recombination, and nonrandom, non-Lamarckian mutation interact in a complementary fashion; evolution is driven by the interaction of parsimony and fit; and random bits do not directly encode improvement but enable generalization by the manner in which they connect with the rest of the evolutionary process. Connections are drawn to Darwin's observations that changed conditions increase the rate of production of heritable variation; to the causes of bell-shaped distributions of traits and how these distributions respond to selection; and to computational learning theory, where analogizing evolution to learning in accord with IBE casts individuals as examples and places the learned hypothesis at the population level. The model highlights the importance of incorporating internal integration of information through heritable change in both evolutionary theory and evolutionary computation.
Related papers
- GESR: A Genetic Programming-Based Symbolic Regression Method with Gene Editing [27.125242277304267]
Genetic Programming (GP) based on evolutionary algorithms remains one of the most classical and widely adopted methods.<n>We propose in this paper a symbolic regression approach based on gene editing, termed GESR.
arXiv Detail & Related papers (2026-05-11T15:00:22Z) - Towards A Generative Protein Evolution Machine with DPLM-Evo [73.57855006698269]
We present DPLM-Evo, an evolutionary discrete diffusion framework that explicitly predicts substitution, insertion, and deletion operations during denoising.<n> DPLM-Evo improves sequence understanding and state-of-the-art mutation effect prediction performance on ProteinGym in the single-sequence setting.
arXiv Detail & Related papers (2026-04-30T19:59:07Z) - Limits of Lamarckian Evolution Under Pressure of Morphological Novelty [0.7646713951724009]
Lamarckian inheritance has been shown to be a powerful accelerator in systems where the joint evolution of robot morphologies and controllers is enhanced with individual learning.<n>In this study, we examine how Lamarckian inheritance performs when the search process is driven toward high morphological variance.
arXiv Detail & Related papers (2026-04-17T09:04:58Z) - How Information Evolves: Stability-Driven Assembly and the Emergence of a Natural Genetic Algorithm [1.2691047660244335]
We present StabilityDriven Assembly (SDA), a framework in which hallmark assembly combined with persistence biases populations toward longer-lived motifs.<n>We apply SDA/GA to chemical symbol space using SMILES fragments with recombination, mutation, and a stability function.<n>Results motivate an evolutionary ladder hypothesis where persistence-driven selection precedes genetic replication.
arXiv Detail & Related papers (2026-01-22T15:47:48Z) - G2PDiffusion: Cross-Species Genotype-to-Phenotype Prediction via Evolutionary Diffusion [108.94237816552024]
We propose the first genotype-to-phenotype diffusion model (G2PDiffusion) that generates morphological images from DNA.<n>The model contains three novel components: 1) a MSA retrieval engine that identifies conserved and co-evolutionary patterns; 2) an environment-aware MSA conditional encoder that effectively models complex genotype-environment interactions; and 3) an adaptive phenomic alignment module to improve genotype-phenotype consistency.
arXiv Detail & Related papers (2025-02-07T06:16:31Z) - Predicting Genetic Mutation from Whole Slide Images via Biomedical-Linguistic Knowledge Enhanced Multi-label Classification [119.13058298388101]
We develop a Biological-knowledge enhanced PathGenomic multi-label Transformer to improve genetic mutation prediction performances.
BPGT first establishes a novel gene encoder that constructs gene priors by two carefully designed modules.
BPGT then designs a label decoder that finally performs genetic mutation prediction by two tailored modules.
arXiv Detail & Related papers (2024-06-05T06:42:27Z) - Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning [78.38442423223832]
We develop a novel codebook pre-training task, namely masked microenvironment modeling.
We demonstrate superior performance and training efficiency over state-of-the-art pre-training-based methods in mutation effect prediction.
arXiv Detail & Related papers (2024-05-16T03:53:21Z) - Role of Morphogenetic Competency on Evolution [0.0]
In Evolutionary Computation, the inverse relationship (impact of intelligence on evolution) is approached from the perspective of organism level behaviour.
We focus on the intelligence of a minimal model of a system navigating anatomical morphospace.
We evolve populations of artificial embryos using a standard genetic algorithm in silico.
arXiv Detail & Related papers (2023-10-13T11:58:18Z) - Unbalanced Diffusion Schr\"odinger Bridge [71.31485908125435]
We introduce unbalanced DSBs which model the temporal evolution of marginals with arbitrary finite mass.
This is achieved by deriving the time reversal of differential equations with killing and birth terms.
We present two novel algorithmic schemes that comprise a scalable objective function for training unbalanced DSBs.
arXiv Detail & Related papers (2023-06-15T12:51:56Z) - EvoVGM: A Deep Variational Generative Model for Evolutionary Parameter
Estimation [0.0]
We propose a method for a deep variational Bayesian generative model that jointly approximates the true posterior of local biological evolutionary parameters.
We show the consistency and effectiveness of the method on synthetic sequence alignments simulated with several evolutionary scenarios and on a real virus sequence alignment.
arXiv Detail & Related papers (2022-05-25T20:08:10Z) - Epigenetic opportunities for Evolutionary Computation [0.0]
Evolutionary Computation is a group of biologically inspired algorithms used to solve complex optimisation problems.
It can be split into Evolutionary Algorithms, which take inspiration from genetic inheritance, and Swarm Intelligence algorithms, that take inspiration from cultural inheritance.
This paper breaks down successful bio-inspired algorithms under a contemporary biological framework based on the Extended Evolutionary Synthesis.
arXiv Detail & Related papers (2021-08-10T09:44:53Z) - Matchmaker, Matchmaker, Make Me a Match: Geometric, Variational, and
Evolutionary Implications of Criteria for Tag Affinity [68.8204255655161]
We show that tag-matching criteria can influence the rate of adaptive evolution and the quality of evolved solutions.
By showing that tag-matching criteria influence connectivity patterns and evolutionary dynamics, our findings also raise fundamental questions about the properties of tag-matching systems in nature.
arXiv Detail & Related papers (2021-08-10T08:21:45Z) - Epigenetic evolution of deep convolutional models [81.21462458089142]
We build upon a previously proposed neuroevolution framework to evolve deep convolutional models.
We propose a convolutional layer layout which allows kernels of different shapes and sizes to coexist within the same layer.
The proposed layout enables the size and shape of individual kernels within a convolutional layer to be evolved with a corresponding new mutation operator.
arXiv Detail & Related papers (2021-04-12T12:45:16Z) - Correlated Mixed Membership Modeling of Somatic Mutations [0.0]
Cancer is biologically redundant, so it is important to identify all possible sets of mutations for effective patient treatment.
Recent studies of cancer somatic mutation profiles seek to identify mutations for targeted therapy in personalized medicine.
We propose the zero-inflated negative binomial process to infer the inherent structure of somatic mutation profiles through latent representations.
arXiv Detail & Related papers (2020-05-21T21:52:35Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.