Learning the Geometry of Data: A Mathematical Review of Shape Space Analysis
- URL: http://arxiv.org/abs/2606.17022v1
- Date: Mon, 15 Jun 2026 17:50:00 GMT
- Title: Learning the Geometry of Data: A Mathematical Review of Shape Space Analysis
- Abstract summary: A central objective of machine learning is to identify structure and patterns in data.<n>Traditional machine learning methods are often ill-equipped to account for the nonlinear geometric structure underlying these data.<n>This survey synthesizes a rapidly growing body of work on shape space analysis.
- Score: 6.027669163011307
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: A central objective of machine learning is to identify structure and patterns in data. Advances in data acquisition have increasingly produced datasets whose observations possess rich geometric form, giving rise to shape spaces that encode variability in object geometry. Such datasets arise across a wide range of disciplines, including biology, medicine, anthropology, and computer vision, where subtle geometric differences often carry important scientific information. Traditional machine learning methods, however, are frequently ill-equipped to account for the nonlinear geometric structure underlying these data. This survey synthesizes a rapidly growing body of work on shape space analysis, which provides a mathematical and computational framework for the study of geometric data. Drawing on ideas from differential geometry, statistics, and machine learning, we organize the literature around a common analytical pipeline: shape representation and parameterization, the rigorous construction of robust geodesic metrics, statistical analysis on shape spaces, and geometry-aware learning methods. We discuss how these tools enable the characterization of shape variability, the comparison of geometric objects, and the analysis of structural trajectories across populations and time. To illustrate the breadth of the field, we highlight applications spanning multiple scales of biological organization, including studies of subcellular morphology and primate tooth evolution. Across these and many other domains, researchers face common challenges arising from complex, nonlinear, and often unaligned geometric variation. The review concludes by identifying key theoretical and computational challenges, as well as emerging opportunities driven by increasingly large and diverse geometric datasets.
Related papers
- A roadmap for curvature-based geometric data analysis and learning [3.5808917363708743]
We present the first comprehensive review of existing discrete curvature models, covering their mathematical foundations, computational formulations, and practical applications in data analysis and learning.<n>Finally, we review state-of-the-art applications of curvature in both supervised and unsupervised learning.
arXiv Detail & Related papers (2025-10-26T09:31:41Z) - Geometry Distributions [51.4061133324376]
We propose a novel geometric data representation that models geometry as distributions.
Our approach uses diffusion models with a novel network architecture to learn surface point distributions.
We evaluate our representation qualitatively and quantitatively across various object types, demonstrating its effectiveness in achieving high geometric fidelity.
arXiv Detail & Related papers (2024-11-25T04:06:48Z) - A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications [71.809127869349]
This paper formalizes geometric graph as the data structure, on top of which we provide a unified view of existing models from the geometric message passing perspective.<n>We also summarize the applications as well as the related datasets to facilitate later research for methodology development and experimental evaluation.
arXiv Detail & Related papers (2024-03-01T12:13:04Z) - A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems [87.30652640973317]
Recent advances in computational modelling of atomic systems represent them as geometric graphs with atoms embedded as nodes in 3D Euclidean space.
Geometric Graph Neural Networks have emerged as the preferred machine learning architecture powering applications ranging from protein structure prediction to molecular simulations and material generation.
This paper provides a comprehensive and self-contained overview of the field of Geometric GNNs for 3D atomic systems.
arXiv Detail & Related papers (2023-12-12T18:44:19Z) - Symmetry-Informed Geometric Representation for Molecules, Proteins, and
Crystalline Materials [66.14337835284628]
We propose a platform, coined Geom3D, which enables benchmarking the effectiveness of geometric strategies.
Geom3D contains 16 advanced symmetry-informed geometric representation models and 14 geometric pretraining methods over 46 diverse datasets.
arXiv Detail & Related papers (2023-06-15T05:37:25Z) - Exploring Data Geometry for Continual Learning [64.4358878435983]
We study continual learning from a novel perspective by exploring data geometry for the non-stationary stream of data.
Our method dynamically expands the geometry of the underlying space to match growing geometric structures induced by new data.
Experiments show that our method achieves better performance than baseline methods designed in Euclidean space.
arXiv Detail & Related papers (2023-04-08T06:35:25Z) - Towards a mathematical understanding of learning from few examples with
nonlinear feature maps [68.8204255655161]
We consider the problem of data classification where the training set consists of just a few data points.
We reveal key relationships between the geometry of an AI model's feature space, the structure of the underlying data distributions, and the model's generalisation capabilities.
arXiv Detail & Related papers (2022-11-07T14:52:58Z) - Geometric Algebra Attention Networks for Small Point Clouds [0.0]
Problems in the physical sciences deal with relatively small sets of points in two- or three-dimensional space.
We present rotation- and permutation-equivariant architectures for deep learning on these small point clouds.
We demonstrate the usefulness of these architectures by training models to solve sample problems relevant to physics, chemistry, and biology.
arXiv Detail & Related papers (2021-10-05T22:52:12Z) - Computational Analysis of Deformable Manifolds: from Geometric Modelling
to Deep Learning [0.0]
We will show that the diversity of non-flat spaces provides a rich area of study.
We will explore geometric methods for shape processing and data analysis.
arXiv Detail & Related papers (2020-09-03T16:50:48Z) - Representations, Metrics and Statistics For Shape Analysis of Elastic
Graphs [21.597624908203805]
This paper introduces a far-reaching geometric approach for analyzing shapes of graphical objects, such as road networks, blood vessels, brain fiber tracts, etc.
It represents such objects, exhibiting differences in both geometries and topologies, as graphs made of curves with arbitrary shapes (edges) and connected at arbitrary junctions (nodes)
arXiv Detail & Related papers (2020-02-29T16:07:48Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.