Algorithmic statistics of retinal images
- URL: http://arxiv.org/abs/2608.09989v2
- Date: Wed, 12 Aug 2026 13:09:57 GMT
- Title: Algorithmic statistics of retinal images
- Abstract summary: We present a metric learning approach using the normalized compression distance (NCD) combined with anisotropic structure-enhancing filters.<n>We validate the NCD-measured structural differences between pairs of images against the physician-measured change in visual field function.<n>The normalized compression vectors (NCV) are proposed as a feature set measuring visual differences among a collection of 3-D microscopy images.
- Score: 1.2899392854599374
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: There has been a tremendous amount of image processing and machine learning research to measure and classify disease progression from live optical coherence tomography (OCT) imaging of the retina. The images considered here are large, complex, three-dimensional (3-D) and difficult to visualize effectively. Many current supervised machine learning approaches, \emph{e.g.} neural networks, are non-metric meaning that any features or measurements generated can introduce systematic distortion that may be correlated with underlying non-meaningful physiological differences. Here we present a metric learning approach using the normalized compression distance (NCD) combined with anisotropic structure-enhancing filters to quantify and visualize the principal differences among a collection of 3-D retinal images. We validate the NCD-measured structural differences between pairs of images against the physician-measured change in visual field function, achieving a prediction error of $\sim$ 0.5 dB, more accurate than non-metric deep learning approaches. The normalized compression vectors (NCV) are proposed as a feature set measuring visual differences among a collection of 3-D microscopy images. The utility of the NCV for visualizing and measuring patterns of change is demonstrated for a human with moderate non-progressing glaucoma and for a non-human primate model using intraocular pressure setting manipulation. We conclude with a brief simulation of non-metric embedding features, \emph{e.g.} from neural networks, introducing class-correlated statistical distortion.
Related papers
- Don't Mind the Gaps: Implicit Neural Representations for Resolution-Agnostic Retinal OCT Analysis [1.0093567618205226]
Implicit neural representations (INRs) have emerged as a tool to store voxelized data as a continuous representation.<n>We propose two frameworks that make use of this characteristic of INRs for dense 3D analyses of retinal OCT volumes.
arXiv Detail & Related papers (2026-01-05T15:41:03Z) - AI-CNet3D: An Anatomically-Informed Cross-Attention Network with Multi-Task Consistency Fine-tuning for 3D Glaucoma Classification [0.4999814847776097]
Glaucoma is a progressive eye disease that leads to optic nerve damage, causing irreversible vision loss if left untreated.<n>We propose a novel hybrid deep learning model that integrates cross-attention mechanisms into a 3D convolutional neural network.<n>We have named this model AI-CNet3D (AI-See'-Net3D) to reflect its design as an Anatomically-Informed Cross-attention Network operating on 3D data.
arXiv Detail & Related papers (2025-10-01T13:30:55Z) - Adapting Visual-Language Models for Generalizable Anomaly Detection in Medical Images [68.42215385041114]
This paper introduces a novel lightweight multi-level adaptation and comparison framework to repurpose the CLIP model for medical anomaly detection.
Our approach integrates multiple residual adapters into the pre-trained visual encoder, enabling a stepwise enhancement of visual features across different levels.
Our experiments on medical anomaly detection benchmarks demonstrate that our method significantly surpasses current state-of-the-art models.
arXiv Detail & Related papers (2024-03-19T09:28:19Z) - Learning Multimodal Volumetric Features for Large-Scale Neuron Tracing [72.45257414889478]
We aim to reduce human workload by predicting connectivity between over-segmented neuron pieces.
We first construct a dataset, named FlyTracing, that contains millions of pairwise connections of segments expanding the whole fly brain.
We propose a novel connectivity-aware contrastive learning method to generate dense volumetric EM image embedding.
arXiv Detail & Related papers (2024-01-05T19:45:12Z) - Deep learning network to correct axial and coronal eye motion in 3D OCT
retinal imaging [65.47834983591957]
We propose deep learning based neural networks to correct axial and coronal motion artifacts in OCT based on a single scan.
The experimental result shows that the proposed method can effectively correct motion artifacts and achieve smaller error than other methods.
arXiv Detail & Related papers (2023-05-27T03:55:19Z) - Single-subject Multi-contrast MRI Super-resolution via Implicit Neural
Representations [9.683341998041634]
Implicit Neural Representations (INR) proposed to learn two different contrasts of complementary views in a continuous spatial function.
Our model provides realistic super-resolution across different pairs of contrasts in our experiments with three datasets.
arXiv Detail & Related papers (2023-03-27T10:18:42Z) - Acute ischemic stroke lesion segmentation in non-contrast CT images
using 3D convolutional neural networks [0.0]
We propose an automatic algorithm aimed at volumetric segmentation of acute ischemic stroke lesion in non-contrast computed tomography brain 3D images.
Our deep-learning approach is based on the popular 3D U-Net convolutional neural network architecture.
arXiv Detail & Related papers (2023-01-17T10:39:39Z) - Affinity Feature Strengthening for Accurate, Complete and Robust Vessel
Segmentation [48.638327652506284]
Vessel segmentation is crucial in many medical image applications, such as detecting coronary stenoses, retinal vessel diseases and brain aneurysms.
We present a novel approach, the affinity feature strengthening network (AFN), which jointly models geometry and refines pixel-wise segmentation features using a contrast-insensitive, multiscale affinity approach.
arXiv Detail & Related papers (2022-11-12T05:39:17Z) - Multi-View Photometric Stereo Revisited [100.97116470055273]
Multi-view photometric stereo (MVPS) is a preferred method for detailed and precise 3D acquisition of an object from images.
We present a simple, practical approach to MVPS, which works well for isotropic as well as other object material types such as anisotropic and glossy.
The proposed approach shows state-of-the-art results when tested extensively on several benchmark datasets.
arXiv Detail & Related papers (2022-10-14T09:46:15Z) - Two-Stream Graph Convolutional Network for Intra-oral Scanner Image
Segmentation [133.02190910009384]
We propose a two-stream graph convolutional network (i.e., TSGCN) to handle inter-view confusion between different raw attributes.
Our TSGCN significantly outperforms state-of-the-art methods in 3D tooth (surface) segmentation.
arXiv Detail & Related papers (2022-04-19T10:41:09Z) - Negligible effect of brain MRI data preprocessing for tumor segmentation [36.89606202543839]
We conduct experiments on three publicly available datasets and evaluate the effect of different preprocessing steps in deep neural networks.
Our results demonstrate that most popular standardization steps add no value to the network performance.
We suggest that image intensity normalization approaches do not contribute to model accuracy because of the reduction of signal variance with image standardization.
arXiv Detail & Related papers (2022-04-11T17:29:36Z) - About Explicit Variance Minimization: Training Neural Networks for
Medical Imaging With Limited Data Annotations [2.3204178451683264]
Variance Aware Training (VAT) method exploits this property by introducing the variance error into the model loss function.
We validate VAT on three medical imaging datasets from diverse domains and various learning objectives.
arXiv Detail & Related papers (2021-05-28T21:34:04Z) - Revisiting 3D Context Modeling with Supervised Pre-training for
Universal Lesion Detection in CT Slices [48.85784310158493]
We propose a Modified Pseudo-3D Feature Pyramid Network (MP3D FPN) to efficiently extract 3D context enhanced 2D features for universal lesion detection in CT slices.
With the novel pre-training method, the proposed MP3D FPN achieves state-of-the-art detection performance on the DeepLesion dataset.
The proposed 3D pre-trained weights can potentially be used to boost the performance of other 3D medical image analysis tasks.
arXiv Detail & Related papers (2020-12-16T07:11:16Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.