Joint reconstruction and bias field correction for undersampled MR imaging

• URL: http://arxiv.org/abs/2007.13123v1
• Date: Sun, 26 Jul 2020 12:58:34 GMT
• Title: Joint reconstruction and bias field correction for undersampled MR imaging
• Authors: M\'elanie Gaillochet and Kerem C. Tezcan and Ender Konukoglu
• Abstract summary: Undersampling the k-space in MRI allows saving precious acquisition time, yet results in an ill-posed inversion problem. Deep learning schemes are susceptible to differences between the training data and the image to be reconstructed at test time. In this work, we address the sensitivity of the reconstruction problem to the bias field and propose to model it explicitly in the reconstruction.
• Score: 7.409376558513677
• License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
• Abstract: Undersampling the k-space in MRI allows saving precious acquisition time, yet results in an ill-posed inversion problem. Recently, many deep learning techniques have been developed, addressing this issue of recovering the fully sampled MR image from the undersampled data. However, these learning based schemes are susceptible to differences between the training data and the image to be reconstructed at test time. One such difference can be attributed to the bias field present in MR images, caused by field inhomogeneities and coil sensitivities. In this work, we address the sensitivity of the reconstruction problem to the bias field and propose to model it explicitly in the reconstruction, in order to decrease this sensitivity. To this end, we use an unsupervised learning based reconstruction algorithm as our basis and combine it with a N4-based bias field estimation method, in a joint optimization scheme. We use the HCP dataset as well as in-house measured images for the evaluations. We show that the proposed method improves the reconstruction quality, both visually and in terms of RMSE.

Related papers

• On the Foundation Model for Cardiac MRI Reconstruction [6.284878525302227]
  We propose a foundation model that uses adaptive unrolling, channel-shifting, and Pattern and Contrast-Prompt-UNet to tackle the problem. The PCP-UNet is equipped with an image contrast and sampling pattern prompt.
  arXiv  Detail & Related papers  (2024-11-15T18:15:56Z)
• Analysis of Deep Image Prior and Exploiting Self-Guidance for Image Reconstruction [13.277067849874756]
  We study how DIP recovers information from undersampled imaging measurements. We introduce a self-driven reconstruction process that concurrently optimize both the network weights and the input. Our method incorporates a novel denoiser regularization term which enables robust and stable joint estimation of both the network input and reconstructed image.
  arXiv  Detail & Related papers  (2024-02-06T15:52:23Z)
• CMRxRecon: An open cardiac MRI dataset for the competition of accelerated image reconstruction [62.61209705638161]
  There has been growing interest in deep learning-based CMR imaging algorithms. Deep learning methods require large training datasets. This dataset includes multi-contrast, multi-view, multi-slice and multi-coil CMR imaging data from 300 subjects.
  arXiv  Detail & Related papers  (2023-09-19T15:14:42Z)
• Attention Hybrid Variational Net for Accelerated MRI Reconstruction [7.046523233290946]
  The application of compressed sensing (CS)-enabled data reconstruction for accelerating magnetic resonance imaging (MRI) remains a challenging problem. This is due to the fact that the information lost in k-space from the acceleration mask makes it difficult to reconstruct an image similar to the quality of a fully sampled image. We propose a deep learning-based attention hybrid variational network that performs learning in both the k-space and image domain.
  arXiv  Detail & Related papers  (2023-06-21T16:19:07Z)
• Stable Deep MRI Reconstruction using Generative Priors [13.400444194036101]
  We propose a novel deep neural network based regularizer which is trained in a generative setting on reference magnitude images only. The results demonstrate competitive performance, on par with state-of-the-art end-to-end deep learning methods.
  arXiv  Detail & Related papers  (2022-10-25T08:34:29Z)
• Adaptive Local Neighborhood-based Neural Networks for MR Image Reconstruction from Undersampled Data [7.670270099306413]
  Recent works have shown significant promise for reconstructing MR images from sparsely sampled k-space data using deep learning. In this work, we propose a technique that rapidly estimates deep neural networks directly at reconstruction time by fitting them on small adaptively estimated neighborhoods of a training set. Our results demonstrate that our proposed locally-trained method produces higher-quality reconstructions compared to models trained globally on larger datasets as well as other scan-adaptive methods.
  arXiv  Detail & Related papers  (2022-06-01T21:37:03Z)
• Reference-based Magnetic Resonance Image Reconstruction Using Texture Transforme [86.6394254676369]
  We propose a novel Texture Transformer Module (TTM) for accelerated MRI reconstruction. We formulate the under-sampled data and reference data as queries and keys in a transformer. The proposed TTM can be stacked on prior MRI reconstruction approaches to further improve their performance.
  arXiv  Detail & Related papers  (2021-11-18T03:06:25Z)
• Multi-Modal MRI Reconstruction with Spatial Alignment Network [51.74078260367654]
  In clinical practice, magnetic resonance imaging (MRI) with multiple contrasts is usually acquired in a single study. Recent researches demonstrate that, considering the redundancy between different contrasts or modalities, a target MRI modality under-sampled in the k-space can be better reconstructed with the helps from a fully-sampled sequence. In this paper, we integrate the spatial alignment network with reconstruction, to improve the quality of the reconstructed target modality.
  arXiv  Detail & Related papers  (2021-08-12T08:46:35Z)
• Adaptive Gradient Balancing for UndersampledMRI Reconstruction and Image-to-Image Translation [60.663499381212425]
  We enhance the image quality by using a Wasserstein Generative Adversarial Network combined with a novel Adaptive Gradient Balancing technique. In MRI, our method minimizes artifacts, while maintaining a high-quality reconstruction that produces sharper images than other techniques.
  arXiv  Detail & Related papers  (2021-04-05T13:05:22Z)
• Multi-institutional Collaborations for Improving Deep Learning-based Magnetic Resonance Image Reconstruction Using Federated Learning [62.17532253489087]
  Deep learning methods have been shown to produce superior performance on MR image reconstruction. These methods require large amounts of data which is difficult to collect and share due to the high cost of acquisition and medical data privacy regulations. We propose a federated learning (FL) based solution in which we take advantage of the MR data available at different institutions while preserving patients' privacy.
  arXiv  Detail & Related papers  (2021-03-03T03:04:40Z)
• Improved Slice-wise Tumour Detection in Brain MRIs by Computing Dissimilarities between Latent Representations [68.8204255655161]
  Anomaly detection for Magnetic Resonance Images (MRIs) can be solved with unsupervised methods. We have proposed a slice-wise semi-supervised method for tumour detection based on the computation of a dissimilarity function in the latent space of a Variational AutoEncoder. We show that by training the models on higher resolution images and by improving the quality of the reconstructions, we obtain results which are comparable with different baselines.
  arXiv  Detail & Related papers  (2020-07-24T14:02:09Z)

This list is automatically generated from the titles and abstracts of the papers in this site.

This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.