Identification of 1H-NMR Spectra of Xyloglucan Oligosaccharides: A
Comparative Study of Artificial Neural Networks and Bayesian Classification
Using Nonparametric Density Estimation
- URL: http://arxiv.org/abs/2008.01004v1
- Date: Thu, 30 Jul 2020 16:29:04 GMT
- Title: Identification of 1H-NMR Spectra of Xyloglucan Oligosaccharides: A
Comparative Study of Artificial Neural Networks and Bayesian Classification
Using Nonparametric Density Estimation
- Authors: Faramarz Valafar, Homayoun Valafar, William S. York
- Abstract summary: We report the first instrument independent computer-assisted automated identification system for a group of complex carbohydrates known as the xyloglucan oligosaccharides.
The system uses Artificial Neural Networks (ANNs) technology and is insensitive to the instrument and environment-dependent variations in 1H-NMR spectroscopy.
- Score: 0.2578242050187029
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Proton nuclear magnetic resonance (1H-NMR) is a widely used tool for chemical
structural analysis. However, 1H-NMR spectra suffer from natural aberrations
that render computer-assisted automated identification of these spectra
difficult, and at times impossible. Previous efforts have successfully
implemented instrument dependent or conditional identification of these
spectra. In this paper, we report the first instrument independent
computer-assisted automated identification system for a group of complex
carbohydrates known as the xyloglucan oligosaccharides. The developed system is
also implemented on the world wide web (http://www.ccrc.uga.edu) as part of an
identification package called the CCRC-Net and is intended to recognize any
submitted 1H-NMR spectrum of these structures with reasonable signal-to-noise
ratio, recorded on any 500 MHz NMR instrument. The system uses Artificial
Neural Networks (ANNs) technology and is insensitive to the instrument and
environment-dependent variations in 1H-NMR spectroscopy. In this paper,
comparative results of the ANN engine versus a multidimensional Bayes'
classifier is also presented.
Related papers
- Fast characterization of optically detected magnetic resonance spectra via data clustering [0.0]
Optically detected magnetic resonance (ODMR) has become a well-established and powerful technique for measuring the spin state of solid-state quantum emitters.
Central to many of these sensing applications is the ability to reliably analyze ODMR data.
We present an algorithm based on data clustering that overcomes this limitation.
arXiv Detail & Related papers (2024-05-28T23:18:47Z) - AI-enabled prediction of NMR spectroscopy: Deducing 2-D NMR of carbohydrate [7.470166291890153]
AI-driven NMR prediction, powered by advanced machine learning and predictive algorithms, has fundamentally reshaped the interpretation of NMR spectra.
Our methodology is versatile, catering to both monosaccharide-derived small molecules, oligosaccharides and large polysaccharides.
Given the complex nature involved in the generation of 2D NMRs, our objective is to fully leverage the potential of AI to enhance the precision, efficiency, and comprehensibility of NMR spectral analysis.
arXiv Detail & Related papers (2024-03-17T21:52:51Z) - Electron energy loss spectroscopy database synthesis and automation of
core-loss edge recognition by deep-learning neural networks [0.0]
A convolutional-bidirectional long short-term memory neural network (CNN-BiLSTM) is proposed to automate the detection and elemental identification of core-loss edges from raw spectra.
The high accuracy of the network, 94.9 %, proves that, without complicated preprocessing of the raw spectra, the proposed CNN-BiLSTM network achieves the automation of core-loss edge recognition for EELS spectra with high accuracy.
arXiv Detail & Related papers (2022-09-26T20:57:34Z) - Spectral Complexity-scaled Generalization Bound of Complex-valued Neural
Networks [78.64167379726163]
This paper is the first work that proves a generalization bound for the complex-valued neural network.
We conduct experiments by training complex-valued convolutional neural networks on different datasets.
arXiv Detail & Related papers (2021-12-07T03:25:25Z) - Unsupervised Spectral Unmixing For Telluric Correction Using A Neural
Network Autoencoder [58.720142291102135]
We present a neural network autoencoder approach for extracting a telluric transmission spectrum from a large set of high-precision observed solar spectra from the HARPS-N radial velocity spectrograph.
arXiv Detail & Related papers (2021-11-17T12:54:48Z) - Machine Learning for Vibrational Spectroscopy via Divide-and-Conquer
Semiclassical Initial Value Representation Molecular Dynamics with
Application to N-Methylacetamide [56.515978031364064]
A machine learning algorithm for partitioning the nuclear vibrational space into subspaces is introduced.
The subdivision criterion is based on Liouville's theorem, i.e. best preservation of the unitary of the reduced dimensionality Jacobian determinant.
The algorithm is applied to the divide-and-conquer semiclassical calculation of the power spectrum of 12-atom trans-N-Methylacetamide.
arXiv Detail & Related papers (2021-01-11T14:47:33Z) - Confidence-guided Lesion Mask-based Simultaneous Synthesis of Anatomic
and Molecular MR Images in Patients with Post-treatment Malignant Gliomas [65.64363834322333]
Confidence Guided SAMR (CG-SAMR) synthesizes data from lesion information to multi-modal anatomic sequences.
module guides the synthesis based on confidence measure about the intermediate results.
experiments on real clinical data demonstrate that the proposed model can perform better than the state-of-theart synthesis methods.
arXiv Detail & Related papers (2020-08-06T20:20:22Z) - A Comparative study of Artificial Neural Networks Using Reinforcement
learning and Multidimensional Bayesian Classification Using Parzen Density
Estimation for Identification of GC-EIMS Spectra of Partially Methylated
Alditol Acetates [0.304585143845864]
This study reports the development of a pattern recognition search engine for a World Wide Web-based database of gas chromatography-electron impact mass spectra (GC-EIMS) of partially methylated Alditol acetates (PMAAs)
The developed system is implemented on the world wide web, and is intended to identify PMAAs using submitted spectra of these molecules recorded on any GC-EIMS instrument.
arXiv Detail & Related papers (2020-07-31T17:54:51Z) - Multi-Tones' Phase Coding (MTPC) of Interaural Time Difference by
Spiking Neural Network [68.43026108936029]
We propose a pure spiking neural network (SNN) based computational model for precise sound localization in the noisy real-world environment.
We implement this algorithm in a real-time robotic system with a microphone array.
The experiment results show a mean error azimuth of 13 degrees, which surpasses the accuracy of the other biologically plausible neuromorphic approach for sound source localization.
arXiv Detail & Related papers (2020-07-07T08:22:56Z) - A Review of 1D Convolutional Neural Networks toward Unknown Substance
Identification in Portable Raman Spectrometer [0.0]
Raman spectroscopy is a powerful analytical tool with applications ranging from quality control to cutting edge biomedical research.
They have been adopted widely by first responders and law enforcement agencies for the field analysis of unknown substances.
Field detection and identification of unknown substances with Raman spectroscopy rely heavily on the spectral matching capability of the devices on hand.
arXiv Detail & Related papers (2020-06-18T14:28:00Z) - Two-Dimensional Single- and Multiple-Quantum Correlation Spectroscopy in
Zero-Field Nuclear Magnetic Resonance [55.41644538483948]
We present single- and multiple-quantum correlation $J$-spectroscopy detected in zero magnetic field using a Rb vapor-cell magnetometer.
At zero field the spectrum of ethanol appears as a mixture of carbon isotopomers, and correlation spectroscopy is useful in separating the two composite spectra.
arXiv Detail & Related papers (2020-04-09T10:02:45Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.