Deep Graph Normalizer: A Geometric Deep Learning Approach for Estimating
Connectional Brain Templates
- URL: http://arxiv.org/abs/2012.14131v1
- Date: Mon, 28 Dec 2020 08:01:49 GMT
- Title: Deep Graph Normalizer: A Geometric Deep Learning Approach for Estimating
Connectional Brain Templates
- Authors: Mustafa Burak Gurbuz and Islem Rekik
- Abstract summary: A connectional brain template (CBT) is a normalized graph-based representation of a population of brain networks.
Deep Graph Normalizer (DGN) is the first geometric deep learning architecture for normalizing a population of MVBNs.
DGN learns how to fuse multi-view brain networks while capturing non-linear patterns across subjects.
- Score: 0.0
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: A connectional brain template (CBT) is a normalized graph-based
representation of a population of brain networks also regarded as an average
connectome. CBTs are powerful tools for creating representative maps of brain
connectivity in typical and atypical populations. Particularly, estimating a
well-centered and representative CBT for populations of multi-view brain
networks (MVBN) is more challenging since these networks sit on complex
manifolds and there is no easy way to fuse different heterogeneous network
views. This problem remains unexplored with the exception of a few recent works
rooted in the assumption that the relationship between connectomes are mostly
linear. However, such an assumption fails to capture complex patterns and
non-linear variation across individuals. Besides, existing methods are simply
composed of sequential MVBN processing blocks without any feedback mechanism,
leading to error accumulation. To address these issues, we propose Deep Graph
Normalizer (DGN), the first geometric deep learning (GDL) architecture for
normalizing a population of MVBNs by integrating them into a single
connectional brain template. Our end-to-end DGN learns how to fuse multi-view
brain networks while capturing non-linear patterns across subjects and
preserving brain graph topological properties by capitalizing on graph
convolutional neural networks. We also introduce a randomized weighted loss
function which also acts as a regularizer to minimize the distance between the
population of MVBNs and the estimated CBT, thereby enforcing its centeredness.
We demonstrate that DGN significantly outperforms existing state-of-the-art
methods on estimating CBTs on both small-scale and large-scale connectomic
datasets in terms of both representativeness and discriminability (i.e.,
identifying distinctive connectivities fingerprinting each brain network
population).
Related papers
- Deep Cross-Modality and Resolution Graph Integration for Universal Brain
Connectivity Mapping and Augmentation [0.0]
The connectional brain template (CBT) captures the shared traits across all individuals of a given population of brain connectomes.
Here, we propose the first multimodal multiresolution graph integration framework that maps a given connectomic population into a well centered CBT.
We show that our framework significantly outperforms benchmarks in reconstruction quality, augmentation task, centeredness and topological soundness.
arXiv Detail & Related papers (2022-09-13T14:04:12Z) - Deep Architecture Connectivity Matters for Its Convergence: A
Fine-Grained Analysis [94.64007376939735]
We theoretically characterize the impact of connectivity patterns on the convergence of deep neural networks (DNNs) under gradient descent training.
We show that by a simple filtration on "unpromising" connectivity patterns, we can trim down the number of models to evaluate.
arXiv Detail & Related papers (2022-05-11T17:43:54Z) - Comparative Survey of Multigraph Integration Methods for Holistic Brain
Connectivity Mapping [0.0]
We review current state-of-the-art methods designed to estimate well-centered and representative CBT for populations of single-view and multi-view brain networks.
We demonstrate that the deep graph normalizer (DGN) method significantly outperforms other multi-graph integration methods for estimating CBTs.
arXiv Detail & Related papers (2022-04-05T13:34:34Z) - A Heterogeneous Graph Based Framework for Multimodal Neuroimaging Fusion
Learning [6.23207187065507]
We present a Heterogeneous Graph neural network for Multimodal fusion learning (HGM)
Traditional GNN-based models usually assume the brain network is a homogeneous graph with single type of nodes and edges.
Our results on two datasets show the superiority of proposed model over other multimodal methods for disease prediction task.
arXiv Detail & Related papers (2021-10-16T04:15:33Z) - Recurrent Multigraph Integrator Network for Predicting the Evolution of
Population-Driven Brain Connectivity Templates [0.0]
We learn how to estimate a connectional brain template from a population of brain multigraphs, where each graph quantifies a particular relationship between pairs of brain regions of interest (ROIs)
Our ReMI-Net is composed of recurrent neural blocks with graph convolutional layers using a cross-node message passing to first learn hidden-states embeddings of each CBT node.
We derive the CBT adjacency matrix from the learned hidden state graph representation.
arXiv Detail & Related papers (2021-10-06T10:00:05Z) - Redundant representations help generalization in wide neural networks [71.38860635025907]
We study the last hidden layer representations of various state-of-the-art convolutional neural networks.
We find that if the last hidden representation is wide enough, its neurons tend to split into groups that carry identical information, and differ from each other only by statistically independent noise.
arXiv Detail & Related papers (2021-06-07T10:18:54Z) - Topological obstructions in neural networks learning [67.8848058842671]
We study global properties of the loss gradient function flow.
We use topological data analysis of the loss function and its Morse complex to relate local behavior along gradient trajectories with global properties of the loss surface.
arXiv Detail & Related papers (2020-12-31T18:53:25Z) - Spatio-Temporal Inception Graph Convolutional Networks for
Skeleton-Based Action Recognition [126.51241919472356]
We design a simple and highly modularized graph convolutional network architecture for skeleton-based action recognition.
Our network is constructed by repeating a building block that aggregates multi-granularity information from both the spatial and temporal paths.
arXiv Detail & Related papers (2020-11-26T14:43:04Z) - Multi-View Brain HyperConnectome AutoEncoder For Brain State
Classification [0.0]
We propose a new strategy to build a hyperconnectome for each brain view based on nearest neighbour algorithm.
We also design a hyperconnectome autoencoder framework which operates directly on the multi-view hyperconnectomes.
Our experiments showed that the learned embeddings by HCAE yield to better results for brain state classification.
arXiv Detail & Related papers (2020-09-24T08:51:44Z) - Learning Connectivity of Neural Networks from a Topological Perspective [80.35103711638548]
We propose a topological perspective to represent a network into a complete graph for analysis.
By assigning learnable parameters to the edges which reflect the magnitude of connections, the learning process can be performed in a differentiable manner.
This learning process is compatible with existing networks and owns adaptability to larger search spaces and different tasks.
arXiv Detail & Related papers (2020-08-19T04:53:31Z) - Context-Aware Refinement Network Incorporating Structural Connectivity
Prior for Brain Midline Delineation [50.868845400939314]
We propose a context-aware refinement network (CAR-Net) to refine and integrate the feature pyramid representation generated by the UNet.
For keeping the structural connectivity of the brain midline, we introduce a novel connectivity regular loss.
The proposed method requires fewer parameters and outperforms three state-of-the-art methods in terms of four evaluation metrics.
arXiv Detail & Related papers (2020-07-10T14:01:20Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.