Prostate Gland Segmentation in Histology Images via Residual and
Multi-Resolution U-Net
- URL: http://arxiv.org/abs/2105.10556v1
- Date: Fri, 21 May 2021 20:11:36 GMT
- Title: Prostate Gland Segmentation in Histology Images via Residual and
Multi-Resolution U-Net
- Authors: Julio Silva-Rodr\'iguez, Elena Pay\'a-Bosch, Gabriel Garc\'ia,
Adri\'an Colomer and Valery Naranjo
- Abstract summary: This work is a prostate gland segmentation based on U-Net convolutional neural network architectures modified with residual and multi-resolution blocks, trained using data augmentation techniques.
The residual configuration outperforms in the test subset the previous state-of-the-art approaches in an image-level comparison, reaching an average Dice Index of 0.77.
- Score: 1.244681179922733
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Prostate cancer is one of the most prevalent cancers worldwide. One of the
key factors in reducing its mortality is based on early detection. The
computer-aided diagnosis systems for this task are based on the glandular
structural analysis in histology images. Hence, accurate gland detection and
segmentation is crucial for a successful prediction. The methodological basis
of this work is a prostate gland segmentation based on U-Net convolutional
neural network architectures modified with residual and multi-resolution
blocks, trained using data augmentation techniques. The residual configuration
outperforms in the test subset the previous state-of-the-art approaches in an
image-level comparison, reaching an average Dice Index of 0.77.
Related papers
- Cancer-Net PCa-Gen: Synthesis of Realistic Prostate Diffusion Weighted
Imaging Data via Anatomic-Conditional Controlled Latent Diffusion [68.45407109385306]
In Canada, prostate cancer is the most common form of cancer in men and accounted for 20% of new cancer cases for this demographic in 2022.
There has been significant interest in the development of deep neural networks for prostate cancer diagnosis, prognosis, and treatment planning using diffusion weighted imaging (DWI) data.
In this study, we explore the efficacy of latent diffusion for generating realistic prostate DWI data through the introduction of an anatomic-conditional controlled latent diffusion strategy.
arXiv Detail & Related papers (2023-11-30T15:11:03Z) - A Pathologist-Informed Workflow for Classification of Prostate Glands in
Histopathology [62.997667081978825]
Pathologists diagnose and grade prostate cancer by examining tissue from needle biopsies on glass slides.
Cancer's severity and risk of metastasis are determined by the Gleason grade, a score based on the organization and morphology of prostate cancer glands.
This paper proposes an automated workflow that follows pathologists' textitmodus operandi, isolating and classifying multi-scale patches of individual glands.
arXiv Detail & Related papers (2022-09-27T14:08:19Z) - RCA-IUnet: A residual cross-spatial attention guided inception U-Net
model for tumor segmentation in breast ultrasound imaging [0.6091702876917281]
The article introduces an efficient residual cross-spatial attention guided inception U-Net (RCA-IUnet) model with minimal training parameters for tumor segmentation.
The RCA-IUnet model follows U-Net topology with residual inception depth-wise separable convolution and hybrid pooling layers.
Cross-spatial attention filters are added to suppress the irrelevant features and focus on the target structure.
arXiv Detail & Related papers (2021-08-05T10:35:06Z) - Going Deeper through the Gleason Scoring Scale: An Automatic end-to-end
System for Histology Prostate Grading and Cribriform Pattern Detection [7.929433631399375]
The objective of this work is to develop a deep-learning-based system able to support pathologists in the daily analysis of prostate biopsies.
The methodological core of this work is a patch-wise predictive model based on convolutional neural networks able to determine the presence of cancerous patterns.
arXiv Detail & Related papers (2021-05-21T17:51:53Z) - WeGleNet: A Weakly-Supervised Convolutional Neural Network for the
Semantic Segmentation of Gleason Grades in Prostate Histology Images [1.52819437883813]
We propose a deep-learning-based system able to detect local cancerous patterns in the prostate tissue using only the global-level Gleason score during training.
We obtained a Cohen's quadratic kappa (k) of 0.67 for the pixel-level prediction of cancerous patterns in the validation cohort.
We compared the model performance for semantic segmentation of Gleason grades with supervised state-of-the-art architectures in the test cohort.
arXiv Detail & Related papers (2021-05-21T16:27:16Z) - Wide & Deep neural network model for patch aggregation in CNN-based
prostate cancer detection systems [51.19354417900591]
Prostate cancer (PCa) is one of the leading causes of death among men, with almost 1.41 million new cases and around 375,000 deaths in 2020.
To perform an automatic diagnosis, prostate tissue samples are first digitized into gigapixel-resolution whole-slide images.
Small subimages called patches are extracted and predicted, obtaining a patch-level classification.
arXiv Detail & Related papers (2021-05-20T18:13:58Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Gleason Grading of Histology Prostate Images through Semantic
Segmentation via Residual U-Net [60.145440290349796]
The final diagnosis of prostate cancer is based on the visual detection of Gleason patterns in prostate biopsy by pathologists.
Computer-aided-diagnosis systems allow to delineate and classify the cancerous patterns in the tissue.
The methodological core of this work is a U-Net convolutional neural network for image segmentation modified with residual blocks able to segment cancerous tissue.
arXiv Detail & Related papers (2020-05-22T19:49:10Z) - Stan: Small tumor-aware network for breast ultrasound image segmentation [68.8204255655161]
We propose a novel deep learning architecture called Small Tumor-Aware Network (STAN) to improve the performance of segmenting tumors with different size.
The proposed approach outperformed the state-of-the-art approaches in segmenting small breast tumors.
arXiv Detail & Related papers (2020-02-03T22:25:01Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.