Weakly Supervised Learning for cell recognition in immunohistochemical
cytoplasm staining images
- URL: http://arxiv.org/abs/2202.13372v1
- Date: Sun, 27 Feb 2022 14:33:36 GMT
- Title: Weakly Supervised Learning for cell recognition in immunohistochemical
cytoplasm staining images
- Authors: Shichuan Zhang, Chenglu Zhu, Honglin Li, Jiatong Cai, Lin Yang
- Abstract summary: We present a novel cell recognition framework based on multi-task learning.
We have evaluated our framework onchemical cytoplasm staining images, and the results demonstrate that our method outperforms recent cell recognition approaches.
- Score: 6.7466668253416024
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Cell classification and counting in immunohistochemical cytoplasm staining
images play a pivotal role in cancer diagnosis. Weakly supervised learning is a
potential method to deal with labor-intensive labeling. However, the inconstant
cell morphology and subtle differences between classes also bring challenges.
To this end, we present a novel cell recognition framework based on multi-task
learning, which utilizes two additional auxiliary tasks to guide robust
representation learning of the main task. To deal with misclassification, the
tissue prior learning branch is introduced to capture the spatial
representation of tumor cells without additional tissue annotation. Moreover,
dynamic masks and consistency learning are adopted to learn the invariance of
cell scale and shape. We have evaluated our framework on immunohistochemical
cytoplasm staining images, and the results demonstrate that our method
outperforms recent cell recognition approaches. Besides, we have also done some
ablation studies to show significant improvements after adding the auxiliary
branches.
Related papers
- Single-Cell Deep Clustering Method Assisted by Exogenous Gene
Information: A Novel Approach to Identifying Cell Types [50.55583697209676]
We develop an attention-enhanced graph autoencoder, which is designed to efficiently capture the topological features between cells.
During the clustering process, we integrated both sets of information and reconstructed the features of both cells and genes to generate a discriminative representation.
This research offers enhanced insights into the characteristics and distribution of cells, thereby laying the groundwork for early diagnosis and treatment of diseases.
arXiv Detail & Related papers (2023-11-28T09:14:55Z) - Tertiary Lymphoid Structures Generation through Graph-based Diffusion [54.37503714313661]
In this work, we leverage state-of-the-art graph-based diffusion models to generate biologically meaningful cell-graphs.
We show that the adopted graph diffusion model is able to accurately learn the distribution of cells in terms of their tertiary lymphoid structures (TLS) content.
arXiv Detail & Related papers (2023-10-10T14:37:17Z) - A novel framework employing deep multi-attention channels network for
the autonomous detection of metastasizing cells through fluorescence
microscopy [0.20999222360659603]
We developed a computational framework that can distinguish between normal and metastasizing human cells.
The method relies on fluorescence microscopy images showing the spatial organization of actin and vimentin filaments in normal and metastasizing single cells.
arXiv Detail & Related papers (2023-09-02T11:20:10Z) - Fluorescent Neuronal Cells v2: Multi-Task, Multi-Format Annotations for
Deep Learning in Microscopy [44.62475518267084]
This dataset encompasses three image collections in which rodent neuronal cells' nuclei and cytoplasm are stained with diverse markers.
Alongside the images, we provide ground-truth annotations for several learning tasks, including semantic segmentation, object detection, and counting.
arXiv Detail & Related papers (2023-07-26T15:14:10Z) - VOLTA: an Environment-Aware Contrastive Cell Representation Learning for
Histopathology [0.3436781233454516]
We propose a self-supervised framework (VOLTA) for cell representation learning in histopathology images.
We subjected our model to extensive experiments on the data collected from multiple institutions around the world.
To showcase the potential power of our proposed framework, we applied VOLTA to ovarian and endometrial cancers with very small sample sizes.
arXiv Detail & Related papers (2023-03-08T16:35:47Z) - Unsupervised Deep Digital Staining For Microscopic Cell Images Via
Knowledge Distillation [46.006296303296544]
It is difficult to obtain large-scale stained/unstained cell image pairs in practice.
We propose a novel unsupervised deep learning framework for the digital staining of cell images.
We show that the proposed unsupervised deep staining method can generate stained images with more accurate positions and shapes of the cell targets.
arXiv Detail & Related papers (2023-03-03T16:26:38Z) - Stain based contrastive co-training for histopathological image analysis [61.87751502143719]
We propose a novel semi-supervised learning approach for classification of histovolution images.
We employ strong supervision with patch-level annotations combined with a novel co-training loss to create a semi-supervised learning framework.
We evaluate our approach in clear cell renal cell and prostate carcinomas, and demonstrate improvement over state-of-the-art semi-supervised learning methods.
arXiv Detail & Related papers (2022-06-24T22:25:31Z) - Learning multi-scale functional representations of proteins from
single-cell microscopy data [77.34726150561087]
We show that simple convolutional networks trained on localization classification can learn protein representations that encapsulate diverse functional information.
We also propose a robust evaluation strategy to assess quality of protein representations across different scales of biological function.
arXiv Detail & Related papers (2022-05-24T00:00:07Z) - Weakly-supervised learning for image-based classification of primary
melanomas into genomic immune subgroups [1.4585861543119112]
We develop deep learning models to classify gigapixel H&E stained pathology slides into immune subgroups.
We leverage a multiple-instance learning approach, which only requires slide-level labels and uses an attention mechanism to highlight regions of high importance to the classification.
arXiv Detail & Related papers (2022-02-23T13:57:35Z) - Towards Interpretable Attention Networks for Cervical Cancer Analysis [24.916577293892182]
We evaluate various state-of-the-art deep learning models for the classification of images of multiple cervical cells.
We show the effectiveness of the residual channel attention model for extracting important features from a group of cells.
It also provides interpretable models to address the classification of cervical cells.
arXiv Detail & Related papers (2021-05-27T13:28:24Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.