Patient Aware Active Learning for Fine-Grained OCT Classification
- URL: http://arxiv.org/abs/2206.11485v2
- Date: Mon, 27 Jun 2022 17:58:50 GMT
- Title: Patient Aware Active Learning for Fine-Grained OCT Classification
- Authors: Yash-yee Logan, Ryan Benkert, Ahmad Mustafa, Gukyeong Kwon and Ghassan
AlRegib
- Abstract summary: We propose a framework that incorporates clinical insights into the sample selection process of active learning.
Our medically interpretable active learning framework captures diverse disease manifestations from patients to improve performance of OCT classification.
- Score: 12.89552245538411
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: This paper considers making active learning more sensible from a medical
perspective. In practice, a disease manifests itself in different forms across
patient cohorts. Existing frameworks have primarily used mathematical
constructs to engineer uncertainty or diversity-based methods for selecting the
most informative samples. However, such algorithms do not present themselves
naturally as usable by the medical community and healthcare providers. Thus,
their deployment in clinical settings is very limited, if any. For this
purpose, we propose a framework that incorporates clinical insights into the
sample selection process of active learning that can be incorporated with
existing algorithms. Our medically interpretable active learning framework
captures diverse disease manifestations from patients to improve generalization
performance of OCT classification. After comprehensive experiments, we report
that incorporating patient insights within the active learning framework yields
performance that matches or surpasses five commonly used paradigms on two
architectures with a dataset having imbalanced patient distributions. Also, the
framework integrates within existing medical practices and thus can be used by
healthcare providers.
Related papers
- CohortNet: Empowering Cohort Discovery for Interpretable Healthcare Analytics [23.284528154162977]
We propose a cohort auto-discovery model, CohortNet, for interpretable healthcare analysis.
CohortNet learns fine-grained patient representations by separately processing each feature.
It classifies each feature into distinct states and employs a cohort exploration strategy.
arXiv Detail & Related papers (2024-06-20T06:12:23Z) - TREEMENT: Interpretable Patient-Trial Matching via Personalized Dynamic
Tree-Based Memory Network [54.332862955411656]
Clinical trials are critical for drug development but often suffer from expensive and inefficient patient recruitment.
In recent years, machine learning models have been proposed for speeding up patient recruitment via automatically matching patients with clinical trials.
We introduce a dynamic tree-based memory network model named TREEMENT to provide accurate and interpretable patient trial matching.
arXiv Detail & Related papers (2023-07-19T12:35:09Z) - Knowledge Boosting: Rethinking Medical Contrastive Vision-Language
Pre-Training [6.582001681307021]
We propose the Knowledge-Boosting Contrastive Vision-Language Pre-training framework (KoBo)
KoBo integrates clinical knowledge into the learning of vision-language semantic consistency.
Experiments validate the effect of our framework on eight tasks including classification, segmentation, retrieval, and semantic relatedness.
arXiv Detail & Related papers (2023-07-14T09:38:22Z) - A Transformer-based representation-learning model with unified
processing of multimodal input for clinical diagnostics [63.106382317917344]
We report a Transformer-based representation-learning model as a clinical diagnostic aid that processes multimodal input in a unified manner.
The unified model outperformed an image-only model and non-unified multimodal diagnosis models in the identification of pulmonary diseases.
arXiv Detail & Related papers (2023-06-01T16:23:47Z) - Clinical trial site matching with improved diversity using fair policy
learning [56.01170456417214]
We learn a model that maps a clinical trial description to a ranked list of potential trial sites.
Unlike existing fairness frameworks, the group membership of each trial site is non-binary.
We propose fairness criteria based on demographic parity to address such a multi-group membership scenario.
arXiv Detail & Related papers (2022-04-13T16:35:28Z) - LifeLonger: A Benchmark for Continual Disease Classification [59.13735398630546]
We introduce LifeLonger, a benchmark for continual disease classification on the MedMNIST collection.
Task and class incremental learning of diseases address the issue of classifying new samples without re-training the models from scratch.
Cross-domain incremental learning addresses the issue of dealing with datasets originating from different institutions while retaining the previously obtained knowledge.
arXiv Detail & Related papers (2022-04-12T12:25:05Z) - Multi-Modal Learning Using Physicians Diagnostics for Optical Coherence
Tomography Classification [0.0]
We propose a framework that incorporates experts diagnostics and insights into the analysis of Optical Coherence Tomography.
We create a medical diagnostic attribute dataset to improve disease classification using OCT.
arXiv Detail & Related papers (2022-03-20T18:37:20Z) - Fair Conformal Predictors for Applications in Medical Imaging [4.236384785644418]
Conformal methods can complement deep learning models by providing both clinically intuitive way of expressing model uncertainty.
We conduct experiments with a mammographic breast density and dermatology photography datasets to demonstrate the utility of conformal predictions.
We find that conformal predictors can be used to equalize coverage with respect to patient demographics such as race and skin tone.
arXiv Detail & Related papers (2021-09-09T16:31:10Z) - The Medkit-Learn(ing) Environment: Medical Decision Modelling through
Simulation [81.72197368690031]
We present a new benchmarking suite designed specifically for medical sequential decision making.
The Medkit-Learn(ing) Environment is a publicly available Python package providing simple and easy access to high-fidelity synthetic medical data.
arXiv Detail & Related papers (2021-06-08T10:38:09Z) - A Meta-embedding-based Ensemble Approach for ICD Coding Prediction [64.42386426730695]
International Classification of Diseases (ICD) are the de facto codes used globally for clinical coding.
These codes enable healthcare providers to claim reimbursement and facilitate efficient storage and retrieval of diagnostic information.
Our proposed approach enhances the performance of neural models by effectively training word vectors using routine medical data as well as external knowledge from scientific articles.
arXiv Detail & Related papers (2021-02-26T17:49:58Z) - A Practical Approach towards Causality Mining in Clinical Text using
Active Transfer Learning [2.6125458645126907]
Causality mining is an active research area, which requires the application of state-of-the-art natural language processing techniques.
This research work is to create a framework, which can convert clinical text into causal knowledge.
arXiv Detail & Related papers (2020-12-10T06:51:13Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.