GEM-2: Next Generation Molecular Property Prediction Network with Many-body and Full-range Interaction Modeling

• URL: http://arxiv.org/abs/2208.05863v2
• Date: Mon, 15 Aug 2022 07:46:34 GMT
• Title: GEM-2: Next Generation Molecular Property Prediction Network with Many-body and Full-range Interaction Modeling
• Authors: Lihang Liu, Donglong He, Xiaomin Fang, Shanzhuo Zhang, Fan Wang, Jingzhou He, Hua Wu
• Abstract summary: GEM-2 is a novel method for solving the Schr"odinger equation for molecules. It considers both the long-range and many-body interactions in molecules.
• Score: 24.94616336296936
• License: http://creativecommons.org/licenses/by-nc-sa/4.0/
• Abstract: Molecular property prediction is a fundamental task in the drug and material industries. Physically, the properties of a molecule are determined by its own electronic structure, which can be exactly described by the Schr\"odinger equation. However, solving the Schr\"odinger equation for most molecules is extremely challenging due to long-range interactions in the behavior of a quantum many-body system. While deep learning methods have proven to be effective in molecular property prediction, we design a novel method, namely GEM-2, which comprehensively considers both the long-range and many-body interactions in molecules. GEM-2 consists of two interacted tracks: an atom-level track modeling both the local and global correlation between any two atoms, and a pair-level track modeling the correlation between all atom pairs, which embed information between any 3 or 4 atoms. Extensive experiments demonstrated the superiority of GEM-2 over multiple baseline methods in quantum chemistry and drug discovery tasks.

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