Recurrence-free Survival Prediction under the Guidance of Automatic
Gross Tumor Volume Segmentation for Head and Neck Cancers
- URL: http://arxiv.org/abs/2209.11268v1
- Date: Thu, 22 Sep 2022 18:44:57 GMT
- Title: Recurrence-free Survival Prediction under the Guidance of Automatic
Gross Tumor Volume Segmentation for Head and Neck Cancers
- Authors: Kai Wang, Yunxiang Li, Michael Dohopolski, Tao Peng, Weiguo Lu, You
Zhang, Jing Wang
- Abstract summary: We developed an automated primary tumor (GTVp) and lymph nodes (GTVn) segmentation method.
We extracted radiomics features from the segmented tumor volume and constructed a multi-modality tumor recurrence-free survival (RFS) prediction model.
- Score: 8.598790229614071
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: For Head and Neck Cancers (HNC) patient management, automatic gross tumor
volume (GTV) segmentation and accurate pre-treatment cancer recurrence
prediction are of great importance to assist physicians in designing
personalized management plans, which have the potential to improve the
treatment outcome and quality of life for HNC patients. In this paper, we
developed an automated primary tumor (GTVp) and lymph nodes (GTVn) segmentation
method based on combined pre-treatment positron emission tomography/computed
tomography (PET/CT) scans of HNC patients. We extracted radiomics features from
the segmented tumor volume and constructed a multi-modality tumor
recurrence-free survival (RFS) prediction model, which fused the prediction
results from separate CT radiomics, PET radiomics, and clinical models. We
performed 5-fold cross-validation to train and evaluate our methods on the
MICCAI 2022 HEad and neCK TumOR segmentation and outcome prediction challenge
(HECKTOR) dataset. The ensemble prediction results on the testing cohort
achieved Dice scores of 0.77 and 0.73 for GTVp and GTVn segmentation,
respectively, and a C-index value of 0.67 for RFS prediction. The code is
publicly available (https://github.com/wangkaiwan/HECKTOR-2022-AIRT). Our
team's name is AIRT.
Related papers
- Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation [47.119513326344126]
The BraTS-MEN-RT challenge aims to advance automated segmentation algorithms using the largest known multi-institutional dataset of radiotherapy planning brain MRIs.
Each case includes a defaced 3D post-contrast T1-weighted radiotherapy planning MRI in its native acquisition space.
Target volume annotations adhere to established radiotherapy planning protocols.
arXiv Detail & Related papers (2024-05-28T17:25:43Z) - Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge [44.586530244472655]
We describe the design and results from the BraTS 2023 Intracranial Meningioma Challenge.
The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in that it focused on meningiomas.
The top ranked team had a lesion-wise median dice similarity coefficient (DSC) of 0.976, 0.976, and 0.964 for enhancing tumor, tumor core, and whole tumor.
arXiv Detail & Related papers (2024-05-16T03:23:57Z) - Improving Breast Cancer Grade Prediction with Multiparametric MRI Created Using Optimized Synthetic Correlated Diffusion Imaging [71.91773485443125]
Grading plays a vital role in breast cancer treatment planning.
The current tumor grading method involves extracting tissue from patients, leading to stress, discomfort, and high medical costs.
This paper examines using optimized CDI$s$ to improve breast cancer grade prediction.
arXiv Detail & Related papers (2024-05-13T15:48:26Z) - Prediction of recurrence free survival of head and neck cancer using
PET/CT radiomics and clinical information [0.0]
We built Cox proportional hazard (CoxPH) models that predict the recurrence free survival (RFS) of oropharyngeal HNC patients.
Our models utilise both clinical information and multimodal radiomics features extracted from tumour regions in Computed Tomography (CT) and Positron Emission Tomography (PET)
Our under- and over-segmentation study confirms that segmentation accuracy affects radiomics extraction, however, it affects PET and CT differently.
arXiv Detail & Related papers (2024-02-28T15:35:41Z) - SegRap2023: A Benchmark of Organs-at-Risk and Gross Tumor Volume
Segmentation for Radiotherapy Planning of Nasopharyngeal Carcinoma [45.15178196643517]
delineation of Gross Tumor Volumes (GTVs) and Organs-At-Risk (OARs) is crucial in radiation treatment.
The SegRap2023 challenge was organized in conjunction with MICCAI2023 and presented a large-scale benchmark for OAR and GTV segmentation.
We detail the challenge and analyze the solutions of all participants.
arXiv Detail & Related papers (2023-12-15T07:08:38Z) - Semi-supervised ViT knowledge distillation network with style transfer
normalization for colorectal liver metastases survival prediction [1.283897253352624]
We propose an end-to-end approach for automated prognosis prediction using histology slides stained with H&E and HPS.
We first employ a Generative Adversarial Network (GAN) for slide normalization to reduce staining variations and improve the overall quality of the images that are used as input to our prediction pipeline.
We exploit the extracted features for the metastatic nodules and surrounding tissue to train a prognosis model. In parallel, we train a vision Transformer (ViT) in a knowledge distillation framework to replicate and enhance the performance of the prognosis prediction.
arXiv Detail & Related papers (2023-11-17T03:32:11Z) - Towards Tumour Graph Learning for Survival Prediction in Head & Neck
Cancer Patients [0.0]
Nearly one million new cases of head & neck cancer diagnosed worldwide in 2020.
automated segmentation and prognosis estimation approaches can help ensure each patient gets the most effective treatment.
This paper presents a framework to perform these functions on arbitrary field of view (FoV) PET and CT registered scans.
arXiv Detail & Related papers (2023-04-17T09:32:06Z) - Radiomics-enhanced Deep Multi-task Learning for Outcome Prediction in
Head and Neck Cancer [11.795108660250843]
We propose a radiomics-enhanced deep multi-task framework for outcome prediction from PET/CT images.
Our novelty is to incorporate radiomics as an enhancement to our recently proposed Deep Multi-task Survival model (DeepMTS)
Our method achieved a C-index of 0.681 on the testing set, placing the 2nd on the leaderboard with only 0.00068 lower in C-index than the 1st place.
arXiv Detail & Related papers (2022-11-10T08:28:56Z) - Exploiting segmentation labels and representation learning to forecast
therapy response of PDAC patients [60.78505216352878]
We propose a hybrid deep neural network pipeline to predict tumour response to initial chemotherapy.
We leverage a combination of representation transfer from segmentation to classification, as well as localisation and representation learning.
Our approach yields a remarkably data-efficient method able to predict treatment response with a ROC-AUC of 63.7% using only 477 datasets in total.
arXiv Detail & Related papers (2022-11-08T11:50:31Z) - Multimodal PET/CT Tumour Segmentation and Prediction of Progression-Free
Survival using a Full-Scale UNet with Attention [0.8138288420049126]
The MICCAI 2021 HEad and neCK TumOR (HECKTOR) segmentation and outcome prediction challenge creates a platform for comparing segmentation methods.
We trained multiple neural networks for tumor volume segmentation, and these segmentations were ensembled achieving an average Dice Similarity Coefficient of 0.75 in cross-validation.
For prediction of patient progression free survival task, we propose a Cox proportional hazard regression combining clinical, radiomic, and deep learning features.
arXiv Detail & Related papers (2021-11-06T10:28:48Z) - Comparison of Machine Learning Classifiers to Predict Patient Survival
and Genetics of GBM: Towards a Standardized Model for Clinical Implementation [44.02622933605018]
Radiomic models have been shown to outperform clinical data for outcome prediction in glioblastoma (GBM)
We aimed to compare nine machine learning classifiers to predict overall survival (OS), isocitrate dehydrogenase (IDH) mutation, O-6-methylguanine-DNA-methyltransferase (MGMT) promoter methylation, epidermal growth factor receptor (EGFR) VII amplification and Ki-67 expression in GBM patients.
xGB obtained maximum accuracy for OS (74.5%), AB for IDH mutation (88%), MGMT methylation (71,7%), Ki-67 expression (86,6%), and EGFR amplification (81,
arXiv Detail & Related papers (2021-02-10T15:10:37Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.