Causal Inference via Nonlinear Variable Decorrelation for Healthcare
Applications
- URL: http://arxiv.org/abs/2209.14975v1
- Date: Thu, 29 Sep 2022 17:44:14 GMT
- Title: Causal Inference via Nonlinear Variable Decorrelation for Healthcare
Applications
- Authors: Junda Wang, Weijian Li, Han Wang, Hanjia Lyu, Caroline Thirukumaran,
Addisu Mesfin, Jiebo Luo
- Abstract summary: We introduce a novel method with a variable decorrelation regularizer to handle both linear and nonlinear confounding.
We employ association rules as new representations using association rule mining based on the original features to increase model interpretability.
- Score: 60.26261850082012
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Causal inference and model interpretability research are gaining increasing
attention, especially in the domains of healthcare and bioinformatics. Despite
recent successes in this field, decorrelating features under nonlinear
environments with human interpretable representations has not been adequately
investigated. To address this issue, we introduce a novel method with a
variable decorrelation regularizer to handle both linear and nonlinear
confounding. Moreover, we employ association rules as new representations using
association rule mining based on the original features to further proximate
human decision patterns to increase model interpretability. Extensive
experiments are conducted on four healthcare datasets (one synthetically
generated and three real-world collections on different diseases). Quantitative
results in comparison to baseline approaches on parameter estimation and
causality computation indicate the model's superior performance. Furthermore,
expert evaluation given by healthcare professionals validates the effectiveness
and interpretability of the proposed model.
Related papers
- Seeing Unseen: Discover Novel Biomedical Concepts via
Geometry-Constrained Probabilistic Modeling [53.7117640028211]
We present a geometry-constrained probabilistic modeling treatment to resolve the identified issues.
We incorporate a suite of critical geometric properties to impose proper constraints on the layout of constructed embedding space.
A spectral graph-theoretic method is devised to estimate the number of potential novel classes.
arXiv Detail & Related papers (2024-03-02T00:56:05Z) - Neuro-Causal Factor Analysis [18.176375611711396]
We introduce a framework for Neuro-Causal Factor Analysis (NCFA)
NCFA identifies factors via latent causal discovery methods and then uses a variational autoencoder (VAE)
We evaluate NCFA on real and synthetic data sets, finding that it performs comparably to standard VAEs on data reconstruction tasks.
arXiv Detail & Related papers (2023-05-31T12:41:20Z) - Analyzing Effects of Mixed Sample Data Augmentation on Model
Interpretability [15.078314022161237]
We explore the relationship between interpretability and data augmentation strategy in which models are trained.
Experiments show that models trained with mixed sample data augmentation show lower interpretability.
arXiv Detail & Related papers (2023-03-26T03:01:39Z) - Less is More: Mitigate Spurious Correlations for Open-Domain Dialogue
Response Generation Models by Causal Discovery [52.95935278819512]
We conduct the first study on spurious correlations for open-domain response generation models based on a corpus CGDIALOG curated in our work.
Inspired by causal discovery algorithms, we propose a novel model-agnostic method for training and inference of response generation model.
arXiv Detail & Related papers (2023-03-02T06:33:48Z) - Rank-Based Causal Discovery for Post-Nonlinear Models [2.4493299476776778]
Post-nonlinear (PNL) causal models constitute one of the most flexible options for such restricted subclasses.
We propose a new approach for PNL causal discovery that uses rank-based methods to estimate the functional parameters.
arXiv Detail & Related papers (2023-02-23T21:19:23Z) - Generalization bounds and algorithms for estimating conditional average
treatment effect of dosage [13.867315751451494]
We investigate the task of estimating the conditional average causal effect of treatment-dosage pairs from a combination of observational data and assumptions on the causal relationships in the underlying system.
This has been a longstanding challenge for fields of study such as epidemiology or economics that require a treatment-dosage pair to make decisions.
We show empirically new state-of-the-art performance results across several benchmark datasets for this problem.
arXiv Detail & Related papers (2022-05-29T15:26:59Z) - Estimation of Bivariate Structural Causal Models by Variational Gaussian
Process Regression Under Likelihoods Parametrised by Normalising Flows [74.85071867225533]
Causal mechanisms can be described by structural causal models.
One major drawback of state-of-the-art artificial intelligence is its lack of explainability.
arXiv Detail & Related papers (2021-09-06T14:52:58Z) - Efficient Causal Inference from Combined Observational and
Interventional Data through Causal Reductions [68.6505592770171]
Unobserved confounding is one of the main challenges when estimating causal effects.
We propose a novel causal reduction method that replaces an arbitrary number of possibly high-dimensional latent confounders.
We propose a learning algorithm to estimate the parameterized reduced model jointly from observational and interventional data.
arXiv Detail & Related papers (2021-03-08T14:29:07Z) - Accounting for Unobserved Confounding in Domain Generalization [107.0464488046289]
This paper investigates the problem of learning robust, generalizable prediction models from a combination of datasets.
Part of the challenge of learning robust models lies in the influence of unobserved confounders.
We demonstrate the empirical performance of our approach on healthcare data from different modalities.
arXiv Detail & Related papers (2020-07-21T08:18:06Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.