A Novel Dataset and a Deep Learning Method for Mitosis Nuclei
Segmentation and Classification
- URL: http://arxiv.org/abs/2212.13401v1
- Date: Tue, 27 Dec 2022 08:12:42 GMT
- Title: A Novel Dataset and a Deep Learning Method for Mitosis Nuclei
Segmentation and Classification
- Authors: Huadeng Wang, Zhipeng Liu, Rushi Lan, Zhenbing Liu, Xiaonan Luo,
Xipeng Pan, and Bingbing Li
- Abstract summary: Mitosis nuclei count is one of the important indicators for the pathological diagnosis of breast cancer.
We propose a two-stage mitosis segmentation and classification method, named SCMitosis.
The proposed model is verified on the ICPR 2012 dataset, and the highest F-score value of 0.8687 is obtained.
- Score: 10.960222475663006
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Mitosis nuclei count is one of the important indicators for the pathological
diagnosis of breast cancer. The manual annotation needs experienced
pathologists, which is very time-consuming and inefficient. With the
development of deep learning methods, some models with good performance have
emerged, but the generalization ability should be further strengthened. In this
paper, we propose a two-stage mitosis segmentation and classification method,
named SCMitosis. Firstly, the segmentation performance with a high recall rate
is achieved by the proposed depthwise separable convolution residual block and
channel-spatial attention gate. Then, a classification network is cascaded to
further improve the detection performance of mitosis nuclei. The proposed model
is verified on the ICPR 2012 dataset, and the highest F-score value of 0.8687
is obtained compared with the current state-of-the-art algorithms. In addition,
the model also achieves good performance on GZMH dataset, which is prepared by
our group and will be firstly released with the publication of this paper. The
code will be available at:
https://github.com/antifen/mitosis-nuclei-segmentation.
Related papers
- SegPrompt: Using Segmentation Map as a Better Prompt to Finetune Deep
Models for Kidney Stone Classification [62.403510793388705]
Deep learning has produced encouraging results for kidney stone classification using endoscope images.
The shortage of annotated training data poses a severe problem in improving the performance and generalization ability of the trained model.
We propose SegPrompt to alleviate the data shortage problems by exploiting segmentation maps from two aspects.
arXiv Detail & Related papers (2023-03-15T01:30:48Z) - A novel dataset and a two-stage mitosis nuclei detection method based on
hybrid anchor branch [12.701748529240183]
We propose a two-stage cascaded network, named FoCasNet, for mitosis detection.
In the first stage, a detection network named M_det is proposed to detect as many mitoses as possible.
In the second stage, a classification network M_class is proposed to refine the results of the first stage.
arXiv Detail & Related papers (2023-01-18T16:11:09Z) - Comparative analysis of deep learning approaches for AgNOR-stained
cytology samples interpretation [52.77024349608834]
This paper provides a way to analyze argyrophilic nucleolar organizer regions (AgNOR) stained slide using deep learning approaches.
Our results show that the semantic segmentation using U-Net with ResNet-18 or ResNet-34 as the backbone have similar results.
The best model shows an IoU for nucleus, cluster, and satellites of 0.83, 0.92, and 0.99 respectively.
arXiv Detail & Related papers (2022-10-19T15:15:32Z) - ReCasNet: Improving consistency within the two-stage mitosis detection
framework [5.263015177621435]
Existing approaches utilize a two-stage pipeline: the detection stage for identifying the locations of potential mitotic cells and the classification stage for refining prediction confidences.
This pipeline formulation can lead to inconsistencies in the classification stage due to the poor prediction quality of the detection stage and the mismatches in training data distributions.
We propose a Refine Cascade Network (ReCasNet), an enhanced deep learning pipeline that mitigates the aforementioned problems with three improvements.
arXiv Detail & Related papers (2022-02-28T16:03:14Z) - Improving Classification Model Performance on Chest X-Rays through Lung
Segmentation [63.45024974079371]
We propose a deep learning approach to enhance abnormal chest x-ray (CXR) identification performance through segmentations.
Our approach is designed in a cascaded manner and incorporates two modules: a deep neural network with criss-cross attention modules (XLSor) for localizing lung region in CXR images and a CXR classification model with a backbone of a self-supervised momentum contrast (MoCo) model pre-trained on large-scale CXR data sets.
arXiv Detail & Related papers (2022-02-22T15:24:06Z) - PointNu-Net: Keypoint-assisted Convolutional Neural Network for
Simultaneous Multi-tissue Histology Nuclei Segmentation and Classification [23.466331358975044]
We study and design a new method to simultaneously detect, segment, and classify nuclei from Haematoxylin and Eosin stained histopathology data.
We demonstrate the superior performance of our proposed approach for nuclei segmentation and classification across 19 different tissue types.
arXiv Detail & Related papers (2021-11-01T08:29:40Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Weakly Supervised Deep Nuclei Segmentation Using Partial Points
Annotation in Histopathology Images [51.893494939675314]
We propose a novel weakly supervised segmentation framework based on partial points annotation.
We show that our method can achieve competitive performance compared to the fully supervised counterpart and the state-of-the-art methods.
arXiv Detail & Related papers (2020-07-10T15:41:29Z) - Mitosis Detection Under Limited Annotation: A Joint Learning Approach [5.117836409118142]
Deep learning-based mitotic detection is on par with pathologists, but it requires large labeled data for training.
We propose a deep classification framework for enhancing mitosis detection by leveraging class label information, via softmax loss, and spatial distribution information among samples, via distance metric learning.
Our framework significantly improves the detection with small training data and achieves on par or superior performance compared to state-of-the-art methods for using the entire training data.
arXiv Detail & Related papers (2020-06-17T10:46:29Z) - A generic ensemble based deep convolutional neural network for
semi-supervised medical image segmentation [7.141405427125369]
We propose a generic semi-supervised learning framework for image segmentation based on a deep convolutional neural network (DCNN)
Our method is able to significantly improve beyond fully supervised model learning by incorporating unlabeled data.
arXiv Detail & Related papers (2020-04-16T23:41:50Z) - Automatic Data Augmentation via Deep Reinforcement Learning for
Effective Kidney Tumor Segmentation [57.78765460295249]
We develop a novel automatic learning-based data augmentation method for medical image segmentation.
In our method, we innovatively combine the data augmentation module and the subsequent segmentation module in an end-to-end training manner with a consistent loss.
We extensively evaluated our method on CT kidney tumor segmentation which validated the promising results of our method.
arXiv Detail & Related papers (2020-02-22T14:10:13Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.