3D PETCT Tumor Lesion Segmentation via GCN Refinement

• URL: http://arxiv.org/abs/2302.12571v1
• Date: Fri, 24 Feb 2023 10:52:08 GMT
• Title: 3D PETCT Tumor Lesion Segmentation via GCN Refinement
• Authors: Hengzhi Xue, Qingqing Fang, Yudong Yao and Yueyang Teng
• Abstract summary: We propose a post-processing method based on a graph convolutional neural network (GCN) to refine inaccurate segmentation parts. We perform tumor segmentation experiments on the PET/CT dataset in the MICCIA2022 autoPET challenge. The experimental results show that the false positive rate is effectively reduced with nnUNet-GCN refinement.
• Score: 4.929126432666667
• License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
• Abstract: Whole-body PET/CT scan is an important tool for diagnosing various malignancies (e.g., malignant melanoma, lymphoma, or lung cancer), and accurate segmentation of tumors is a key part for subsequent treatment. In recent years, CNN-based segmentation methods have been extensively investigated. However, these methods often give inaccurate segmentation results, such as over-segmentation and under-segmentation. Therefore, to address such issues, we propose a post-processing method based on a graph convolutional neural network (GCN) to refine inaccurate segmentation parts and improve the overall segmentation accuracy. Firstly, nnUNet is used as an initial segmentation framework, and the uncertainty in the segmentation results is analyzed. Certainty and uncertainty nodes establish the nodes of a graph neural network. Each node and its 6 neighbors form an edge, and 32 nodes are randomly selected for uncertain nodes to form edges. The highly uncertain nodes are taken as the subsequent refinement targets. Secondly, the nnUNet result of the certainty nodes is used as label to form a semi-supervised graph network problem, and the uncertainty part is optimized through training the GCN network to improve the segmentation performance. This describes our proposed nnUNet-GCN segmentation framework. We perform tumor segmentation experiments on the PET/CT dataset in the MICCIA2022 autoPET challenge. Among them, 30 cases are randomly selected for testing, and the experimental results show that the false positive rate is effectively reduced with nnUNet-GCN refinement. In quantitative analysis, there is an improvement of 2.12 % on the average Dice score, 6.34 on 95 % Hausdorff Distance (HD95), and 1.72 on average symmetric surface distance (ASSD). The quantitative and qualitative evaluation results show that GCN post-processing methods can effectively improve tumor segmentation performance.

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