Neural networks trained on synthetically generated crystals can extract
structural information from ICSD powder X-ray diffractograms
- URL: http://arxiv.org/abs/2303.11699v3
- Date: Tue, 19 Sep 2023 07:50:08 GMT
- Title: Neural networks trained on synthetically generated crystals can extract
structural information from ICSD powder X-ray diffractograms
- Authors: Henrik Schopmans, Patrick Reiser, Pascal Friederich
- Abstract summary: Machine learning techniques have successfully been used to extract structural information from powder X-ray diffractograms.
We propose an alternative approach of generating synthetic crystals with random coordinates by using the symmetry operations of each space group.
We demonstrate online training of deep ResNet-like models on up to a few million unique on-the-fly generated synthetic diffractograms per hour.
- Score: 0.6906005491572401
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Machine learning techniques have successfully been used to extract structural
information such as the crystal space group from powder X-ray diffractograms.
However, training directly on simulated diffractograms from databases such as
the ICSD is challenging due to its limited size, class-inhomogeneity, and bias
toward certain structure types. We propose an alternative approach of
generating synthetic crystals with random coordinates by using the symmetry
operations of each space group. Based on this approach, we demonstrate online
training of deep ResNet-like models on up to a few million unique on-the-fly
generated synthetic diffractograms per hour. For our chosen task of space group
classification, we achieved a test accuracy of 79.9% on unseen ICSD structure
types from most space groups. This surpasses the 56.1% accuracy of the current
state-of-the-art approach of training on ICSD crystals directly. Our results
demonstrate that synthetically generated crystals can be used to extract
structural information from ICSD powder diffractograms, which makes it possible
to apply very large state-of-the-art machine learning models in the area of
powder X-ray diffraction. We further show first steps toward applying our
methodology to experimental data, where automated XRD data analysis is crucial,
especially in high-throughput settings. While we focused on the prediction of
the space group, our approach has the potential to be extended to related tasks
in the future.
Related papers
- Learning and Controlling Silicon Dopant Transitions in Graphene using
Scanning Transmission Electron Microscopy [58.51812955462815]
We introduce a machine learning approach to determine the transition dynamics of silicon atoms on a single layer of carbon atoms.
The data samples are processed and filtered to produce symbolic representations, which we use to train a neural network to predict transition probabilities.
These learned transition dynamics are then leveraged to guide a single silicon atom throughout the lattice to pre-determined target destinations.
arXiv Detail & Related papers (2023-11-21T21:51:00Z) - Latent Conservative Objective Models for Data-Driven Crystal Structure
Prediction [62.36797874900395]
In computational chemistry, crystal structure prediction is an optimization problem.
One approach to tackle this problem involves building simulators based on density functional theory (DFT) followed by running search in simulation.
We show that our approach, dubbed LCOMs (latent conservative objective models), performs comparably to the best current approaches in terms of success rate of structure prediction.
arXiv Detail & Related papers (2023-10-16T04:35:44Z) - Probabilistic Phase Labeling and Lattice Refinement for Autonomous
Material Research [20.78180998995325]
We present CrystalShift, an efficient algorithm for probabilistic XRD phase labeling.
We demonstrate that CrystalShift provides robust probability, outperforming existing methods on synthetic and experimental datasets.
In addition to efficient phase-mapping, CrystalShift offers quantitative insights into materials' structural parameters, which facilitate expert evaluation and AI-based modeling of the phase space.
arXiv Detail & Related papers (2023-08-15T17:38:38Z) - Exploring Supervised Machine Learning for Multi-Phase Identification and
Quantification from Powder X-Ray Diffraction Spectra [1.0660480034605242]
Powder X-ray diffraction analysis is a critical component of materials characterization methodologies.
Deep learning has become a prime focus for predicting crystallographic parameters and features from X-ray spectra.
Here, we are interested in conventional supervised learning algorithms in lieu of deep learning for multi-label crystalline phase identification.
arXiv Detail & Related papers (2022-11-16T00:36:13Z) - Tracking perovskite crystallization via deep learning-based feature
detection on 2D X-ray scattering data [137.47124933818066]
We propose an automated pipeline for the analysis of X-ray diffraction images based on the Faster R-CNN deep learning architecture.
We demonstrate our method on real-time tracking of organic-inorganic perovskite structure crystallization and test it on two applications.
arXiv Detail & Related papers (2022-02-22T15:39:00Z) - Disentangling multiple scattering with deep learning: application to
strain mapping from electron diffraction patterns [48.53244254413104]
We implement a deep neural network called FCU-Net to invert highly nonlinear electron diffraction patterns into quantitative structure factor images.
We trained the FCU-Net using over 200,000 unique dynamical diffraction patterns which include many different combinations of crystal structures.
Our simulated diffraction pattern library, implementation of FCU-Net, and trained model weights are freely available in open source repositories.
arXiv Detail & Related papers (2022-02-01T03:53:39Z) - Towards an Automatic Analysis of CHO-K1 Suspension Growth in
Microfluidic Single-cell Cultivation [63.94623495501023]
We propose a novel Machine Learning architecture, which allows us to infuse a neural deep network with human-powered abstraction on the level of data.
Specifically, we train a generative model simultaneously on natural and synthetic data, so that it learns a shared representation, from which a target variable, such as the cell count, can be reliably estimated.
arXiv Detail & Related papers (2020-10-20T08:36:51Z) - On Open and Strong-Scaling Tools for Atom Probe Crystallography:
High-Throughput Methods for Indexing Crystal Structure and Orientation [0.0]
Volumetric crystal structure indexing and orientation mapping are key data processing steps for quantitative studies of spatial correlations.
For atom probe tomography (APT) experiments, the strategy of making comparisons between measured and analytically computed patterns is less robust because many APT datasets may contain substantial noise.
We report how this enables the development of an open-source software tool for strong-scaling and automated identifying of crystal structure and mapping crystal orientation in nanocrystalline APT datasets with multiple phases.
arXiv Detail & Related papers (2020-09-01T22:50:03Z) - A Systematic Approach to Featurization for Cancer Drug Sensitivity
Predictions with Deep Learning [49.86828302591469]
We train >35,000 neural network models, sweeping over common featurization techniques.
We found the RNA-seq to be highly redundant and informative even with subsets larger than 128 features.
arXiv Detail & Related papers (2020-04-30T20:42:17Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.